Evidence map›Paper›PMID 37886445›Full record

ArticleResearch square2023

Ancient origin of the rod bipolar cell pathway in the vertebrate retina.

Ayana M Hellevik, Philip Mardoum, Joshua Hahn, Yvonne Kölsch, Florence D D'Orazi, Sachihiro C Suzuki, Leanne Godinho, Owen Lawrence, Fred Rieke, Karthik Shekhar and 5 more

Abstract readPreprint
In one paragraph

Article in Research square, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Ayana M HellevikDepartment of Biological Structure, University of Washington, Seattle, WA 98195, USA.
Philip MardoumDepartment of Biological Structure, University of Washington, Seattle, WA 98195, USA.
Joshua HahnDepartment of Chemical and Biomolecular Engineering; Helen Wills Neuroscience Institute; Vision Sciences Graduate Program; California Institute of Quantitative Biosciences (QB3), University of California Berkley, Berkeley, CA 94720, USA.
Yvonne KölschDepartment of Molecular & Cellular Biology and Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.
Florence D D'OraziDepartment of Biological Structure, University of Washington, Seattle, WA 98195, USA.
Sachihiro C SuzukiDepartment of Biological Structure, University of Washington, Seattle, WA 98195, USA.
Leanne GodinhoInstitute of Neuronal Cell Biology, Technische Universität München, 80802 Munich, Germany.
Owen LawrenceDepartment of Biological Structure, University of Washington, Seattle, WA 98195, USA.
Fred RiekeDepartment of Physiology and Biophysics, University of Washington, Seattle, WA 98195, USA.
Karthik ShekharDepartment of Chemical and Biomolecular Engineering; Helen Wills Neuroscience Institute; Vision Sciences Graduate Program; California Institute of Quantitative Biosciences (QB3), University of California Berkley, Berkeley, CA 94720, USA.
Joshua R SanesDepartment of Molecular & Cellular Biology and Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.
Herwig BaierMax Planck Institute for Biological Intelligence, Department Genes - Circuits - Behavior, 82152 Martinsried, Germany.ORCID 0000-0002-7268-0469
Tom BadenSchool of Life Sciences, University of Sussex, Brighton, BN1 9QG, UK.ORCID 0000-0003-2808-4210
Rachel O WongDepartment of Biological Structure, University of Washington, Seattle, WA 98195, USA.
Takeshi YoshimatsuDepartment of Ophthalmology & Visual Sciences, Washington University in St Louis School of Medicine, St Louis, MO 63110, USA.ORCID 0000-0002-4939-2020

Funding

Vision Research CoreP30EY001730 · NEI · UNIVERSITY OF WASHINGTON · PI Jay Neitz · 1985 to 2026
$23.5M
INTERDISCIPLINARY TRAINING IN DEVELOPMENTAL BIOLOGYT32HD007183 · NICHD · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2015
$5.7M
Comprehensive Classification Of Neuronal Subtypes By Single Cell TranscriptomicsU01MH105960 · NIMH · HARVARD UNIVERSITY · PI REGEV, AVIV, SANES, JOSHUA R · 2014 to 2016
$4.5M
In Vivo Analysis of the Developing Vertebrate RetinaR01EY014358 · NEI · WASHINGTON UNIVERSITY · PI WONG, RACHEL O · 2003 to 2016
$4.3M
Combinatorial roles of cadherins in retinal circuit assembly.R01EY022073 · NEI · HARVARD UNIVERSITY · PI SANES, JOSHUA R · 2012 to 2020
$3.7M
Uncovering the molecular identity of retinal cell types, and their responses to nerve injury using single-cell transcriptomicsR00EY028625 · NEI · UNIVERSITY OF CALIFORNIA BERKELEY · PI SHEKHAR, KARTHIK · 2020 to 2022
$740k
NEI NIH HHS P30 EY001730NEI NIH HHS R00 EY028625NEI NIH HHS R01 EY014358NEI NIH HHS R01 EY022073NICHD NIH HHS T32 HD007183NIMH NIH HHS U01 MH105960Wellcome Trust
6 · The paper itself

Abstract

Vertebrates rely on rod photoreceptors for vision in low-light conditions. Mammals have a specialized downstream circuit for rod signaling called the primary rod pathway, which comprises specific cell types and wiring patterns that are thought to be unique to this lineage. Thus, it has been long assumed that the primary rod pathway evolved in mammals. Here, we challenge this view by demonstrating that the mammalian primary rod pathway is conserved in zebrafish, which diverged from extant mammals ~400 million years ago. Using single-cell RNA-sequencing, we identified two bipolar cell (BC) types in zebrafish that are related to mammalian rod BCs (RBCs) of the primary rod pathway. By combining electrophysiology, histology, and ultrastructural reconstruction of the zebrafish RBCs, we found that, like mammalian RBCs, both zebrafish RBC types connect with all rods in their dendritic territory, and provide output largely onto amacrine cells. The wiring pattern of the amacrine cells post-synaptic to one RBC type is strikingly similar to that of mammalian RBCs, suggesting that the cell types and circuit design of the primary rod pathway have emerged before the divergence of teleost fish and amniotes. The second RBC type, which forms separate pathways, is either lost in mammals or emerged in fish.

Indexed as

EvolutionRetinaRodRod bipolar cells

Identifiers

PMID37886445
PMCPMC10602083

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.