Evidence map›Paper›PMID 37885353›Full record

ArticleMolecular oncology2024

Identification of pathogenic germline variants in a large Chinese lung cancer cohort by clinical sequencing.

Zhe Yu, Zirui Zhang, Jun Liu, Xiaoying Wu, Xiaojun Fan, Jiaohui Pang, Hua Bao, Jiani Yin, Xue Wu, Yang Shao and 2 more

Open access · goldAbstract read
In one paragraph

Article in Molecular oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Zhe YuDepartment of Respiratory Medicine, Ningbo NO.2 Hospital, China.
Zirui ZhangDepartment of Cardiovascular and Thoracic Surgery, Nanjing Drum Tower Hospital Affiliated to Nanjing University School of Medicine, China.
Jun LiuDepartment of Chemotherapy, Affiliated Hospital of Nantong University, China.
Xiaoying WuNanjing Geneseeq Technology Inc., China.
Xiaojun FanNanjing Geneseeq Technology Inc., China.ORCID 0000-0003-1256-5343
Jiaohui PangNanjing Geneseeq Technology Inc., China.
Hua BaoNanjing Geneseeq Technology Inc., China.
Jiani YinNanjing Geneseeq Technology Inc., China.ORCID 0000-0002-9523-1930
Xue WuNanjing Geneseeq Technology Inc., China.
Yang ShaoNanjing Geneseeq Technology Inc., China.
Zhengcheng LiuDepartment of Cardiovascular and Thoracic Surgery, Nanjing Drum Tower Hospital Affiliated to Nanjing University School of Medicine, China.ORCID 0000-0002-4472-4807
Fang LiuSenior Department of Oncology, The Fifth Medical Center of PLA General Hospital, Beijing, China.ORCID 0000-0001-5263-3035
Genesee Community College · USNanjing Drum Tower Hospital · CNChinese PLA General Hospital · CNNanjing Medical University · CNNantong University · CNNingbo No. 2 Hospital · CN

Funding

Nanjing City Key Medical Science and Technology Project Plan ZKX21015The Beijing Medical Public Welfare Foundation HXKT20231002
6 · The paper itself

Abstract

Genetic factors play significant roles in the tumorigenicity of lung cancer; however, there is lack of systematic and large-scale characterization of pathogenic germline variants for lung cancer. In this study, germline variants in 146 preselected cancer-susceptibility genes were detected in 17 904 Chinese lung cancer patients by clinical next-generation sequencing. Among 17 904 patients, 1738 patients (9.7%) carried 1840 pathogenic/likely pathogenic (P/LP) variants from 87 cancer-susceptibility genes. SBDS (SBDS ribosome maturation factor) (1.37%), TSHR (thyroid stimulating hormone receptor) (1.20%), BLM (BLM RecQ like helicase) (0.62%), BRCA2 (BRCA2 DNA repair associated) (0.62%), and ATM (ATM serine/threonine kinase) (0.45%) were the top five genes with the highest overall prevalence. The top mutated pathways were all involved in DNA damage repair (DDR). Case-control analysis showed SBDS c.184A>T(p.K62*), TSHR c.1574T>C(p.F525S), BRIP1 (BRCA1 interacting helicase 1) c.1018C>T(p.L340F), and MUTYH (mutY DNA glycosylase) c.55C>T(p.R19*) were significantly associated with increased lung cancer risk (q value < 0.05). P/LP variants in certain genes were associated with early onset of lung cancer. Our study indicates that Chinese lung cancer patients have a higher prevalence of P/LP variants than previously reported. P/LP variants are distributed in multiple pathways and dominated by DNA damage repair-associated pathways. The association between identified P/LP variants and lung cancer risk requires further studies for verification.

Indexed as

Genetic Predisposition to DiseaseGerm-Line MutationLung NeoplasmsAdultAgedCase-Control StudiesChinaCohort StudiesEast Asian PeopleFemaleHigh-Throughput Nucleotide SequencingHumansMaleMiddle AgedDNA damage repairgermline varianthereditary cancer syndromelung cancer

Identifiers

PMID37885353
PMCPMC11076998
OpenAlexW4387964944

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.