Evidence map›Paper›PMID 37884929›Full record

ArticleBMC cancer2023

Graph Neural Network for representation learning of lung cancer.

Rukhma Aftab, Yan Qiang, Juanjuan Zhao, Zia Urrehman, Zijuan Zhao

Abstract read
In one paragraph

Article in BMC cancer, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Rukhma AftabCollege of Information and Computer, Taiyuan University of Technology, No. 79 Yingze West Street, Taiyuan, 030024, China.
Yan Qiang *College of Information and Computer, Taiyuan University of Technology, No. 79 Yingze West Street, Taiyuan, 030024, China. qiangyan@tyut.edu.cn.
Juanjuan Zhao *College of Information and Computer, Taiyuan University of Technology, No. 79 Yingze West Street, Taiyuan, 030024, China.
Zia Urrehman *College of Information and Computer, Taiyuan University of Technology, No. 79 Yingze West Street, Taiyuan, 030024, China.
Zijuan Zhao *College of Information and Computer, Taiyuan University of Technology, No. 79 Yingze West Street, Taiyuan, 030024, China.

Funding

Major project of National Natural Science Foundation of China 21A20469National Natural Science Foundation of China 6197227
6 · The paper itself

Abstract

The emergence of image-based systems to improve diagnostic pathology precision, involving the intent to label sets or bags of instances, greatly hinges on Multiple Instance Learning for Whole Slide Images(WSIs). Contemporary works have shown excellent performance for a neural network in MIL settings. Here, we examine a graph-based model to facilitate end-to-end learning and sample suitable patches using a tile-based approach. We propose MIL-GNN to employ a graph-based Variational Auto-encoder with a Gaussian mixture model to discover relations between sample patches for the purposes to aggregate patch details into an individual vector representation. Using the classical MIL dataset MUSK and distinguishing two lung cancer sub-types, lung cancer called adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC), we exhibit the efficacy of our technique. We achieved a 97.42% accuracy on the MUSK dataset and a 94.3% AUC on the classification of lung cancer sub-types utilizing features.

Indexed as

AdenocarcinomaCarcinoma, Non-Small-Cell LungCarcinoma, Squamous CellLung NeoplasmsHumansNeural Networks, ComputerGraphGraph neural networksMultiple instance learningWhole slide images

Identifiers

PMID37884929
PMCPMC10601264

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.