Evidence map›Paper›PMID 37884813›Full record

ArticleNature microbiology2023

DNA-binding protein PfAP2-P regulates parasite pathogenesis during malaria parasite blood stages.

Amit Kumar Subudhi, Judith L Green, Rohit Satyam, Rahul P Salunke, Todd Lenz, Muhammad Shuaib, Ioannis Isaioglou, Steven Abel, Mohit Gupta, Luke Esau and 18 more

Open access · hybridAbstract read
In one paragraph

Article in Nature microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
10.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Advances in Single-Cell Sequencing for Infectious Diseases: Progress and Perspectives.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  11. Article
  12. Article
  13. Malaria: past, present, and future.Signal transduction and targeted therapy · 2025
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. eLife · 2024
    Article
  19. ThemSphere · 2024
    Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors at 10 institutions in 5 countries.

Amit Kumar SubudhiPathogen Genomics Group, Bioscience Program, Biological and Environmental Science and Engineering (BESE) Division, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.ORCID 0000-0002-3079-3705
Judith L GreenMalaria Parasitology Laboratory, The Francis Crick Institute, London, UK.ORCID 0000-0001-6825-9404
Rohit Satyam *Department of Computer Science, Jamia Millia Islamia, New Delhi, India.
Rahul P Salunke *Pathogen Genomics Group, Bioscience Program, Biological and Environmental Science and Engineering (BESE) Division, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.
Todd Lenz *Department of Molecular, Cell and Systems Biology, University of California Riverside, Riverside, CA, USA.ORCID 0000-0001-6209-7061
Muhammad ShuaibPathogen Genomics Group, Bioscience Program, Biological and Environmental Science and Engineering (BESE) Division, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.ORCID 0000-0001-6238-7448
Ioannis IsaioglouCell Migration and Signaling Laboratory, Bioscience Program, BESE Division, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.ORCID 0000-0002-0269-6887
Steven AbelDepartment of Molecular, Cell and Systems Biology, University of California Riverside, Riverside, CA, USA.
Mohit GuptaDepartment of Molecular, Cell and Systems Biology, University of California Riverside, Riverside, CA, USA.ORCID 0000-0002-5082-9875
Luke EsauKAUST Core Labs, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.
Tobias MourierPathogen Genomics Group, Bioscience Program, Biological and Environmental Science and Engineering (BESE) Division, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.ORCID 0000-0003-2727-1903
Raushan NugmanovaPathogen Genomics Group, Bioscience Program, Biological and Environmental Science and Engineering (BESE) Division, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.
Sara MfarrejPathogen Genomics Group, Bioscience Program, Biological and Environmental Science and Engineering (BESE) Division, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.ORCID 0000-0002-6460-8862
Rupali ShivapurkarPathogen Genomics Group, Bioscience Program, Biological and Environmental Science and Engineering (BESE) Division, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.
Zenaida SteadPathogen Genomics Group, Bioscience Program, Biological and Environmental Science and Engineering (BESE) Division, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.
Fathia Ben RachedPathogen Genomics Group, Bioscience Program, Biological and Environmental Science and Engineering (BESE) Division, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.ORCID 0000-0001-6601-3080
Yogesh OstwalLaboratory of Chromatin Biochemistry, Bioscience Program, BESE Division, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.
Rachid SougratKAUST Core Labs, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.
Ashraf DadaDepartment of Pathology and Laboratory Medicine, King Faisal Specialist Hospital and Research Center, Jeddah, Kingdom of Saudi Arabia.
Abdullah Fuaad KadamanyDepartment of Pathology and Laboratory Medicine, King Faisal Specialist Hospital and Research Center, Jeddah, Kingdom of Saudi Arabia.
Wolfgang FischleLaboratory of Chromatin Biochemistry, Bioscience Program, BESE Division, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.
Jasmeen MerzabanCell Migration and Signaling Laboratory, Bioscience Program, BESE Division, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.ORCID 0000-0002-7276-2907
Ellen KnuepferMalaria Parasitology Laboratory, The Francis Crick Institute, London, UK.ORCID 0000-0002-6090-1877
David J P FergusonNuffield Department of Clinical Laboratory Science, University of Oxford, John Radcliffe Hospital, Oxford, UK.ORCID 0000-0001-5045-819X
Ishaan GuptaDepartment of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi, India.ORCID 0000-0001-8934-9919
Karine G Le RochDepartment of Molecular, Cell and Systems Biology, University of California Riverside, Riverside, CA, USA.ORCID 0000-0002-4862-9292
Anthony A HolderMalaria Parasitology Laboratory, The Francis Crick Institute, London, UK. tony.holder@crick.ac.uk.ORCID 0000-0002-8490-6058
Arnab PainPathogen Genomics Group, Bioscience Program, Biological and Environmental Science and Engineering (BESE) Division, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia. arnab.pain@kaust.edu.sa.ORCID 0000-0002-1755-2819
King Abdullah University of Science and Technology · SAUniversity of California, Riverside · USThe Francis Crick Institute · GBAlfaisal University · SAHokkaido University · JPIndian Institute of Technology Delhi · INJamia Millia Islamia · INKing Faisal Specialist Hospital & Research Centre · SAOxford Brookes University · GBRoyal Veterinary College · GB

Funding

Chromatin structure and control of gene expression in the human malaria parasiteR01AI136511 · NIAID · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI LE ROCH, KARINE GAELLE · 2018 to 2022
$3.4M
Evolution of the 3D chromatin structure in apicomplexan parasitesR21AI142506 · NIAID · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI LE ROCH, KARINE GAELLE · 2019 to 2020
$479k
NIAID NIH HHS R01 AI136511NIAID NIH HHS R21 AI142506Wellcome Trust
6 · The paper itself

Abstract

Malaria-associated pathogenesis such as parasite invasion, egress, host cell remodelling and antigenic variation requires concerted action by many proteins, but the molecular regulation is poorly understood. Here we have characterized an essential Plasmodium-specific Apicomplexan AP2 transcription factor in Plasmodium falciparum (PfAP2-P; pathogenesis) during the blood-stage development with two peaks of expression. An inducible knockout of gene function showed that PfAP2-P is essential for trophozoite development, and critical for var gene regulation, merozoite development and parasite egress. Chromatin immunoprecipitation sequencing data collected at timepoints matching the two peaks of pfap2-p expression demonstrate PfAP2-P binding to promoters of genes controlling trophozoite development, host cell remodelling, antigenic variation and pathogenicity. Single-cell RNA sequencing and fluorescence-activated cell sorting revealed de-repression of most var genes in Δpfap2-p parasites. Δpfap2-p parasites also overexpress early gametocyte marker genes, indicating a regulatory role in sexual stage conversion. We conclude that PfAP2-P is an essential upstream transcriptional regulator at two distinct stages of the intra-erythrocytic development cycle.

Indexed as

MalariaParasitesPlasmodiumAnimalsGene Expression RegulationPlasmodium falciparum

Identifiers

PMID37884813
PMCPMC10627835
OpenAlexW4387966591

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.