Evidence map›Paper›PMID 37884767›Full record

ArticleNature aging2023

TET2 modulates spatial relocalization of heterochromatin in aged hematopoietic stem and progenitor cells.

Tingting Hong, Jia Li, Lei Guo, Maryn Cavalier, Tianlu Wang, Yaling Dou, Aaron DeLaFuente, Shaohai Fang, Anna Guzman, Katherina Wohlan and 10 more

Open access · greenAbstract read
In one paragraph

Article in Nature aging, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 4 institutions in 2 countries.

Tingting Hong *Institute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.
Jia Li *Institute of Biosciences and Technology, Texas A&M University, Houston, TX, USA. jiali@tamu.edu.
Lei GuoInstitute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.
Maryn CavalierInstitute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.ORCID 0009-0007-2317-5128
Tianlu WangInstitute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.
Yaling DouInstitute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.
Aaron DeLaFuenteInstitute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.
Shaohai FangInstitute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.
Anna GuzmanDepartment of Molecular Cell Biology, Baylor College of Medicine, Houston, TX, USA.
Katherina WohlanDepartment of Molecular Cell Biology, Baylor College of Medicine, Houston, TX, USA.
Chiraag KapadiaDepartment of Molecular Cell Biology, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0003-1805-8879
Carina RosasDepartment of Molecular Cell Biology, Baylor College of Medicine, Houston, TX, USA.
Yaling YangDepartment of Leukemia, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
C Cameron YinDepartment of Leukemia, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Shaoying LiDepartment of Leukemia, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
M James YouDepartment of Leukemia, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Xiaodong ChengDepartment of Epigenetics and Molecular Carcinogenesis, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Margaret A GoodellDepartment of Molecular Cell Biology, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0003-1111-2932
Yubin ZhouInstitute of Biosciences and Technology, Texas A&M University, Houston, TX, USA. yubinzhou@tamu.edu.ORCID 0000-0001-7962-0517
Yun HuangInstitute of Biosciences and Technology, Texas A&M University, Houston, TX, USA. yun.huang@tamu.edu.ORCID 0000-0001-5950-9168
Texas A&M University · USBaylor College of Medicine · USThe University of Texas MD Anderson Cancer Center · USFirst Affiliated Hospital of Guangzhou Medical University · CN

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Michael M Ittmann · 2007 to 2026
$73.9M
Wnt signaling in muscle stem cell agingP01AG036695 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI THOMAS A. RANDO · 2011 to 2026
$29.3M
Project 3: Contribution of inflammation and DNA damaging factors to clonal expansion and malignant transformation in a community cohort of older adultsP01CA265748 · NCI · BAYLOR COLLEGE OF MEDICINE · PI MARGARET A. GOODELL · 2022 to 2026
$13.6M
REGULATION OF HEMATOPOIETIC PROGENITORS BY DE NOVO DNA METHYLATIONR01DK092883 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI GOODELL, MARGARET A. · 2012 to 2024
$7.4M
DNMT3A in Development of Hematologic MalignanciesR01CA183252 · NCI · BAYLOR COLLEGE OF MEDICINE · PI MARGARET A. GOODELL · 2014 to 2026
$7.1M
Epigenetic regulation in cardiac developmentR35HL166557 · NHLBI · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI Yun Huang · 2023 to 2026
$3.8M
NanoOptogenetic immunotherapy for B cell lymphomaR01CA232017 · NCI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI HAN, GANG, ZHOU, YUBIN · 2019 to 2023
$2.2M
Mutual reinforcement between somatic mutations and transcription factors in clonal hematopoiesisR01DK132286 · NIDDK · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI Xiaodong Cheng, Yun Huang · 2023 to 2026
$1.7M
Mutational cooperativity in TET2-associated hematological malignancies.R01CA240258 · NCI · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI HUANG, YUN · 2021 to 2025
$1.7M
Selective targeting of a Rho GTPase mutant for peripheral T cell lymphoma treatmentR21CA277257 · NCI · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI ZHOU, YUBIN · 2023 to 2024
$392k
Regulation of Hematopoietic Progenitors by de novo DNA MethylationR56DK092883 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI GOODELL, MARGARET A. · 2011 to 2011
$344k
Leukemia and Lymphoma Society (Leukemia & Lymphoma Society) LLS-TRP 6680-24NCI NIH HHS P01 CA265748NCI NIH HHS P30 CA125123NCI NIH HHS R01 CA183252NCI NIH HHS R01 CA232017NCI NIH HHS R01 CA240258NCI NIH HHS R21 CA277257NHLBI NIH HHS R35 HL166557NIA NIH HHS P01 AG036695NIDDK NIH HHS R01 DK092883NIDDK NIH HHS R01 DK132286NIDDK NIH HHS R56 DK092883U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) CA183252U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) P01CA265748U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) P30CA125123U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA232017U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA240258U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R21CA277257U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R35HL166557U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases) DK092883U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases) R01DK132286U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) P01AG036695Welch Foundation BE-1913-20220331
6 · The paper itself

Abstract

DNA methylation deregulation at partially methylated domains (PMDs) represents an epigenetic signature of aging and cancer, yet the underlying molecular basis and resulting biological consequences remain unresolved. We report herein a mechanistic link between disrupted DNA methylation at PMDs and the spatial relocalization of H3K9me3-marked heterochromatin in aged hematopoietic stem and progenitor cells (HSPCs) or those with impaired DNA methylation. We uncover that TET2 modulates the spatial redistribution of H3K9me3-marked heterochromatin to mediate the upregulation of endogenous retroviruses (ERVs) and interferon-stimulated genes (ISGs), hence contributing to functional decline of aged HSPCs. TET2-deficient HSPCs retain perinuclear distribution of heterochromatin and exhibit age-related clonal expansion. Reverse transcriptase inhibitors suppress ERVs and ISGs expression, thereby restoring age-related defects in aged HSPCs. Collectively, our findings deepen the understanding of the functional interplay between DNA methylation and histone modifications, which is vital for maintaining heterochromatin function and safeguarding genome stability in stem cells.

Indexed as

Hematopoietic Stem CellsHeterochromatinDNA MethylationHeterochromatin

Identifiers

PMID37884767
PMCPMC11209854
OpenAlexW4387955539

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.