Evidence map›Paper›PMID 37884688›Full record

ArticleNature ecology & evolution2023

Genetics re-establish the utility of 2-methylhopanes as cyanobacterial biomarkers before 750 million years ago.

Yosuke Hoshino, Benjamin J Nettersheim, David A Gold, Christian Hallmann, Galina Vinnichenko, Lennart M van Maldegem, Caleb Bishop, Jochen J Brocks, Eric A Gaucher

Open access · hybridAbstract read
In one paragraph

Article in Nature ecology & evolution, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Origin and Evolution of thePlants (Basel, Switzerland) · 2024
    Review
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Yosuke HoshinoGFZ German Research Centre for Geosciences, Potsdam, Germany. yhoshino@gfz-potsdam.de.ORCID 0000-0002-6335-1815
Benjamin J NettersheimMARUM Center for Marine Environmental Sciences and Department of Geosciences, University of Bremen, Bremen, Germany. bnettersheim@marum.de.ORCID 0000-0002-6478-0689
David A GoldDepartment of Earth and Planetary Sciences, University of California Davis, Davis, CA, USA.ORCID 0000-0003-0135-4022
Christian HallmannGFZ German Research Centre for Geosciences, Potsdam, Germany.
Galina VinnichenkoResearch School of Earth Sciences, The Australian National University, Canberra, Australian Capital Territory, Australia.ORCID 0000-0002-6389-0130
Lennart M van MaldegemResearch School of Earth Sciences, The Australian National University, Canberra, Australian Capital Territory, Australia.
Caleb BishopResearch School of Earth Sciences, The Australian National University, Canberra, Australian Capital Territory, Australia.
Jochen J BrocksResearch School of Earth Sciences, The Australian National University, Canberra, Australian Capital Territory, Australia.ORCID 0000-0002-8430-8744
Eric A GaucherDepartment of Biology, Georgia State University, Atlanta, GA, USA.ORCID 0000-0001-6836-0828
Australian National University · AUGeorgia State University · USGFZ Helmholtz Centre for Geosciences · DEUniversity of Bremen · DEUniversity of California, Davis · US

Funding

Evolution of urate metabolismR01AR069137 · NIAMS · GEORGIA STATE UNIVERSITY · PI GAUCHER, ERIC · 2016 to 2021
$1.5M
NIAMS NIH HHS R01 AR069137
6 · The paper itself

Abstract

Fossilized lipids offer a rare glimpse into ancient ecosystems. 2-Methylhopanes in sedimentary rocks were once used to infer the importance of cyanobacteria as primary producers throughout geological history. However, the discovery of hopanoid C-2 methyltransferase (HpnP) in Alphaproteobacteria led to the downfall of this molecular proxy. In the present study, we re-examined the distribution of HpnP in a new phylogenetic framework including recently proposed candidate phyla and re-interpreted a revised geological record of 2-methylhopanes based on contamination-free samples. We show that HpnP was probably present in the last common ancestor of cyanobacteria, while the gene appeared in Alphaproteobacteria only around 750 million years ago (Ma). A subsequent rise of sedimentary 2-methylhopanes around 600 Ma probably reflects the expansion of Alphaproteobacteria that coincided with the rise of eukaryotic algae-possibly connected by algal dependency on microbially produced vitamin B

Indexed as

CyanobacteriaEcosystemBiomarkersPhylogenyPlantsTriterpenes2-methylhopaneBiomarkersTriterpenes

Identifiers

PMID37884688
PMCPMC10697835
OpenAlexW4387955515

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.