Evidence map›Paper›PMID 37884512›Full record

ArticleNature communications2023

RNA-based translation activators for targeted gene upregulation.

Yang Cao, Huachun Liu, Shannon S Lu, Krysten A Jones, Anitha P Govind, Okunola Jeyifous, Christine Q Simmons, Negar Tabatabaei, William N Green, Jimmy L Holder and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Review
  2. Article
  3. The Versatile Applications of Antisense Oligonucleotides in Modern Medicine.International journal of molecular sciences · 2026
    Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Genetic medicines for epilepsy: unlocking new avenues for seizure control.Frontiers in bioengineering and biotechnology · 2026
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Clinical signatures of SYNGAP1-related disorders through data integration.Genetics in medicine : official journal of the American College of Medical Genetics · 2025
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Yang CaoDepartment of Chemistry, The University of Chicago, Chicago, IL, USA.ORCID 0000-0001-7052-9346
Huachun LiuDepartment of Chemistry, The University of Chicago, Chicago, IL, USA.ORCID 0000-0001-7188-3216
Shannon S LuDepartment of Chemistry, The University of Chicago, Chicago, IL, USA.ORCID 0000-0003-1556-7520
Krysten A JonesDepartment of Chemistry, The University of Chicago, Chicago, IL, USA.
Anitha P GovindDepartment of Neurobiology, The University of Chicago, Chicago, IL, USA.
Okunola JeyifousDepartment of Neurobiology, The University of Chicago, Chicago, IL, USA.ORCID 0000-0002-4176-4694
Christine Q SimmonsDepartment of Pharmacology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.
Negar TabatabaeiDepartment of Pharmacology and Regenerative Medicine, University of Illinois College of Medicine, Chicago, IL, USA.
William N GreenDepartment of Neurobiology, The University of Chicago, Chicago, IL, USA.
Jimmy L HolderDepartment of Pediatrics, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0001-5595-0458
Soroush TahmasebiDepartment of Pharmacology and Regenerative Medicine, University of Illinois College of Medicine, Chicago, IL, USA.
Alfred L GeorgeDepartment of Pharmacology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.ORCID 0000-0002-3993-966X
Bryan C DickinsonDepartment of Chemistry, The University of Chicago, Chicago, IL, USA. dickinson@uchicago.edu.ORCID 0000-0002-9616-1911

Funding

Rapid selection approaches to understand and reprogram proteins and peptidesR35GM119840 · NIGMS · UNIVERSITY OF CHICAGO · PI Bryan Dickinson · 2016 to 2026
$4.8M
Translational regulation of tissue resident macrophages by GCN2R01HL163806 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI Soroush Tahmasebi · 2022 to 2026
$2.4M
Base-resolution mapping and site-specific epitranscriptomic studies in the brainR01MH122142 · NIMH · UNIVERSITY OF CHICAGO · PI DICKINSON, BRYAN, ZHUANG, XIAOXI · 2019 to 2023
$2.3M
NHLBI NIH HHS R01 HL163806NIGMS NIH HHS R35 GM119840NIMH NIH HHS R01 MH122142
6 · The paper itself

Abstract

Technologies capable of programmable translation activation offer strategies to develop therapeutics for diseases caused by insufficient gene expression. Here, we present "translation-activating RNAs" (taRNAs), a bifunctional RNA-based molecular technology that binds to a specific mRNA of interest and directly upregulates its translation. taRNAs are constructed from a variety of viral or mammalian RNA internal ribosome entry sites (IRESs) and upregulate translation for a suite of target mRNAs. We minimize the taRNA scaffold to 94 nucleotides, identify two translation initiation factor proteins responsible for taRNA activity, and validate the technology by amplifying SYNGAP1 expression, a haploinsufficiency disease target, in patient-derived cells. Finally, taRNAs are suitable for delivery as RNA molecules by lipid nanoparticles (LNPs) to cell lines, primary neurons, and mouse liver in vivo. taRNAs provide a general and compact nucleic acid-based technology to upregulate protein production from endogenous mRNAs, and may open up possibilities for therapeutic RNA research.

Indexed as

Gene Expression RegulationProtein BiosynthesisAnimalsHumansInternal Ribosome Entry SitesMammalsMiceRNA, MessengerUp-RegulationInternal Ribosome Entry SitesRNA, Messenger

Identifiers

PMID37884512
PMCPMC10603104

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.