Evidence map›Paper›PMID 37884054›Full record

ArticleJournal of acquired immune deficiency syndromes (1999)2023

Brief Report: The Virome of Bladder Tumors Arising in People Living With HIV.

Gabriel J Starrett, Haidn Foster, Keith Sigel, Yuxin Liu, Eric A Engels

Open access · greenAbstract readCase Reports
In one paragraph

Article in Journal of acquired immune deficiency syndromes (1999), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Gabriel J StarrettCenter for Cancer Research and Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD; and.
Haidn FosterCenter for Cancer Research and Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD; and.
Keith SigelDepartments of Medicine and Pathology, Icahn School of Medicine at Mount Sinai, New York, NY.
Yuxin LiuDepartments of Medicine and Pathology, Icahn School of Medicine at Mount Sinai, New York, NY.
Eric A EngelsCenter for Cancer Research and Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD; and.
Center for Cancer Research · USNational Cancer Institute · US

Funding

Studies of HIV infection and its contribution to the natural history and outcomeZIACP101235 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI ENGELS, ERIC A · 2021 to 2025
$12.6M
Intramural NIH HHS ZIA CP101235
6 · The paper itself

Abstract

backgroundPeople living with HIV (PLWH) have elevated risk for developing virus-related cancers. Bladder cancer risk is not increased in PLWH but is elevated among immunosuppressed solid organ transplant recipients (SOTRs). BK polyomavirus and, to a lesser extent, other viruses have been detected in bladder cancers from SOTRs.

objectiveTo characterize the virome of bladder tumors in PLWH.

designRetrospective case series.

methodsWe sequenced DNA and RNA from archived formalin-fixed bladder tumors from PLWH. Nonhuman reads were assembled and matched to a database of known viruses.

resultsFifteen bladder tumors from PLWH (13 carcinomas, 2 benign tumors) were evaluated. Fourteen tumors were in men, and the median age at diagnosis was 59 years (median CD4 count 460 cells/mm3). All but 1 tumor yielded both sufficient DNA and RNA. One bladder cancer, arising in a 52-year-old man with a CD4 count of 271 cells/mm3, manifested diverse Alphatorquevirus DNA and RNA sequences. A second cancer arising in a 58-year-old male former smoker (CD4 count of 227 cells/mm3) also showed Alphatorquevirus and Gammatorquevirus DNA sequences. Neither tumor exhibited viral integration.

conclusionsAlphatorqueviruses and Gammatorqueviruses are anelloviruses, which have also been detected in bladder cancers from SOTRs, but anelloviruses are common infections, and detection may simply reflect increased abundance in the setting of immunosuppression. The lack of detection of BK polyomavirus among bladder tumors from PLWH parallels the lower level of bladder cancer risk seen in PLWH compared with SOTRs, indirectly supporting a role for BK polyomavirus in causing the excess risk in SOTRs.

Indexed as

BK VirusHIV InfectionsUrinary Bladder NeoplasmsDNAFemaleHumansMaleMiddle AgedRetrospective StudiesRNAViromeDNARNA

Identifiers

PMID37884054
PMCPMC10662940
OpenAlexW4387965464

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.