Evidence map›Paper›PMID 37882528›Full record

ArticleJournal of clinical microbiology2023

A conceptual framework for nomenclatural stability and validity of medically important fungi: a proposed global consensus guideline for fungal name changes supported by ABP, ASM, CLSI, ECMM, ESCMID-EFISG, EUCAST-AFST, FDLC, IDSA, ISHAM, MMSA, and MSGERC.

Sybren de Hoog, Thomas J Walsh, Sarah A Ahmed, Ana Alastruey-Izquierdo, Barbara D Alexander, Maiken Cavling Arendrup, Esther Babady, Feng-Yan Bai, Joan-Miquel Balada-Llasat, Andrew Borman and 57 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
12.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 58 citations in OpenAlex.

  1. Trial
  2. Changes in Epidemiology of Candidemia in the United States With a Focus on Candida auris.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Reaffirming the importance of nomenclature stability forJournal of clinical microbiology · 2026
    Article
  11. Global Emergence ofInfection and drug resistance · 2026
    Review
  12. Review
  13. An update on clinically relevant, rare, and emergingClinical microbiology reviews · 2025
    Review
  14. Name changes for fungi of medical importance, 2022-2024.Journal of clinical microbiology · 2025
    Review
  15. Article
  16. Glycan microarray analysis ofProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  17. Review
  18. 'What's in a name? Fit-for-purpose bacterial nomenclature': meeting report.International journal of systematic and evolutionary microbiology · 2025
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

67 authors at 20 institutions in 15 countries.

Sybren de HoogRadboudumc-CWZ Centre of Expertise for Mycology , Nijmegen, the Netherlands.ORCID 0000-0002-5344-257X
Thomas J WalshInternational Society for Human and Animal Mycology (ISHAM), Working Group Nomenclature.ORCID 0000-0002-4142-8711
Sarah A AhmedRadboudumc-CWZ Centre of Expertise for Mycology , Nijmegen, the Netherlands.ORCID 0000-0003-0155-8113
Ana Alastruey-IzquierdoInternational Society for Human and Animal Mycology (ISHAM), Working Group Nomenclature.ORCID 0000-0001-8651-4405
Barbara D AlexanderFungal Diagnostics Laboratory Consortium (FDLC).
Maiken Cavling ArendrupDepartment of Microbiology and Infection Control, Statens Serum Institut, Copenhagen, Denmark; Department of Clinical Microbiology, Copenhagen University Hospital Rigshospitalet , Copenhagen, Denmark.ORCID 0000-0002-4747-0144
Esther BabadyFungal Diagnostics Laboratory Consortium (FDLC).ORCID 0000-0003-4399-1249
Feng-Yan BaiMycology Committee of Chinese Society for Microbiology.
Joan-Miquel Balada-LlasatFungal Diagnostics Laboratory Consortium (FDLC).
Andrew BormanNational Mycology Reference Laboratory, Public Health England , Bristol, United Kingdom.ORCID 0000-0003-0585-5721
Anuradha ChowdharyFungal Infection Study Group, European Society of Clinical Microbiology and Infectious Diseases (EFISG/ESCMID) , Basel, Switzerland.
Andrew ClarkFungal Diagnostics Laboratory Consortium (FDLC).
Robert C ColgroveDivision of Infectious Diseases, Mount Auburn Hospital , Cambridge, Massachusetts, USA.
Oliver A CornelyEuropean Confederation of Medical Mycology (ECMM).
Tanis C DingleFungal Diagnostics Laboratory Consortium (FDLC).
Philippe J DufresneFungal Diagnostics Laboratory Consortium (FDLC).
Jeff FullerFungal Diagnostics Laboratory Consortium (FDLC).
Jean-Pierre GangneuxEuropean Confederation of Medical Mycology (ECMM).
Connie GibasUniversity of Texas Health Science Center , San Antonio, Texas, USA.
Heather GlasgowFungal Diagnostics Laboratory Consortium (FDLC).
Yvonne GräserDepartment of Parasitology (Charité), Institute of Microbiology and Hygiene, Humboldt University , Berlin, Germany.
Jacques GuillotISHAM Working Group Veterinary Mycology and One Health.
Andreas H GrollFungal Infection Study Group, European Society of Clinical Microbiology and Infectious Diseases (EFISG/ESCMID) , Basel, Switzerland.ORCID 0000-0003-1188-393X
Gerhard HaaseLaboratory Diagnostic Center, RWTH Aachen University Hospital , Aachen, Germany.
Kimberly HansonFungal Diagnostics Laboratory Consortium (FDLC).ORCID 0000-0001-9790-277X
Amanda HarringtonFungal Diagnostics Laboratory Consortium (FDLC).
David L HawksworthRoyal Botanic Gardens, Kew , Richmond, Surrey, United Kingdom.
Randall T HaydenFungal Diagnostics Laboratory Consortium (FDLC).ORCID 0000-0002-3073-4115
Martin HoeniglMycoses Study Group, Education and Research Consortium (MSG-ERC).ORCID 0000-0002-1653-2824
Vit HubkaDepartment of Botany, Charles University , Prague, Czechia.
Kristie JohnsonFungal Diagnostics Laboratory Consortium (FDLC).
Julianne V KusFungal Diagnostics Laboratory Consortium (FDLC).ORCID 0000-0001-6033-7244
Ruoyu LiDepartment of Dermatology and Venereology, Peking University First Hospital , Beijing, China.
Jacques F MeisRadboudumc-CWZ Centre of Expertise for Mycology , Nijmegen, the Netherlands.ORCID 0000-0003-3253-6080
Michaela LacknerInternational Society for Human and Animal Mycology (ISHAM), Working Group Nomenclature.
Fanny LanternierInstitut Pasteur , Paris, France.
Sixto M LealFungal Diagnostics Laboratory Consortium (FDLC).ORCID 0000-0001-6939-9572
Francesca LeeFungal Diagnostics Laboratory Consortium (FDLC).
Shawn R LockhartFungal Diagnostics Laboratory Consortium (FDLC).ORCID 0000-0002-4383-5994
Paul LuethyFungal Diagnostics Laboratory Consortium (FDLC).ORCID 0000-0001-8636-0258
Isabella MartinFungal Diagnostics Laboratory Consortium (FDLC).
Kyung J Kwon-ChungNational Institute of Allergy and Infectious Diseases, National Institutes of Health , Bethesda, Maryland, USA.ORCID 0000-0001-6671-0994
Wieland MeyerNomenclature Committee for Fungi, International Mycological Association (IMA).
M Hong NguyenFungal Diagnostics Laboratory Consortium (FDLC).ORCID 0000-0003-2065-3239
Luis Ostrosky-ZeichnerMycoses Study Group, Education and Research Consortium (MSG-ERC).
Elizabeth PalavecinoFungal Diagnostics Laboratory Consortium (FDLC).
Preeti PancholiFungal Diagnostics Laboratory Consortium (FDLC).ORCID 0000-0001-9053-0264
Peter G PappasMycoses Study Group, Education and Research Consortium (MSG-ERC).
Gary W ProcopFungal Diagnostics Laboratory Consortium (FDLC).ORCID 0000-0002-3164-2968
Scott A RedheadNomenclature Committee for Fungi, International Mycological Association (IMA).
Daniel D RhoadsCleveland Clinic Lerner College of Medicine, Case Western Reserve University , Cleveland, Ohio, USA.ORCID 0000-0002-7636-5191
Stefan RiedelFungal Diagnostics Laboratory Consortium (FDLC).ORCID 0000-0002-0573-4957
Bryan StevensFungal Diagnostics Laboratory Consortium (FDLC).
Kaede Ota SullivanFungal Diagnostics Laboratory Consortium (FDLC).
Paschalis VergidisFungal Diagnostics Laboratory Consortium (FDLC).ORCID 0000-0002-6581-3956
Emmanuel RoilidesInternational Society for Human and Animal Mycology (ISHAM), Working Group Nomenclature.
Amir SeyedmousaviFungal Diagnostics Laboratory Consortium (FDLC).
Lili TaoFungal Diagnostics Laboratory Consortium (FDLC).
Vania A VicenteDepartment of Basic Pathology, Federal University of Paraná , Curitiba, Brazil.
Roxana G VitaleConsejo Nacional de Investigaciones Científicas y Tecnológicas (CONICET) , Buenos Aires, Argentina.ORCID 0000-0001-8425-0856
Qi-Ming WangEngineering Laboratory of Microbial Breeding and Preservation of Hebei Province, School of Life Sciences, Institute of Life Sciences and Green Development, Hebei University , Baoding, China.
Nancy L WengenackFungal Diagnostics Laboratory Consortium (FDLC).ORCID 0000-0003-2853-8219
Lars WestbladeFungal Diagnostics Laboratory Consortium (FDLC).
Nathan WiederholdFungal Diagnostics Laboratory Consortium (FDLC).
Lewis WhitePublic Health Wales Microbiology , Cardiff, United Kingdom.ORCID 0000-0003-3056-4205
Christina M WojewodaDepartment of Pathology and Laboratory Medicine, University of Vermont Medical Center , Burlington, Vermont, USA.ORCID 0000-0002-7761-4612
Sean X ZhangInternational Society for Human and Animal Mycology (ISHAM), Working Group Nomenclature.ORCID 0000-0003-1166-2563
CS Diagnostics · DEClinical and Laboratory Standards Institute · USEuropean Society of Clinical Microbiology and Infectious Diseases · CHRadboud University Nijmegen · NLUniversity of Maryland, Baltimore · USMayo Clinic · USSt. Jude Children's Research Hospital · USThe Ohio State University Wexner Medical Center · USThe University of Texas Health Science Center at San Antonio · USAmerican Board of Internal Medicine · USAtrium Health Wake Forest Baptist · USBeth Israel Deaconess Medical Center · USBritish Mycological Society · GBCenters for Disease Control and Prevention · USCentre Hospitalier Universitaire de Rennes · FRCharles University · CZChinese Academy of Sciences · CNCleveland Clinic · USClinical Research Consortium · USConsejo Nacional de Investigaciones Científicas y Técnicas · AR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rapid pace of name changes of medically important fungi is creating challenges for clinical laboratories and clinicians involved in patient care. We describe two sources of name change which have different drivers, at the species versus the genus level. Some suggestions are made here to reduce the number of name changes. We urge taxonomists to provide diagnostic markers of taxonomic novelties. Given the instability of phylogenetic trees due to variable taxon sampling, we advocate to maintain genera at the largest possible size. Reporting of identified species in complexes or series should where possible comprise both the name of the overarching species and that of the molecular sibling, often cryptic species. Because the use of different names for the same species will be unavoidable for many years to come, an open access online database of the names of all medically important fungi, with proper nomenclatural designation and synonymy, is essential. We further recommend that while taxonomic discovery continues, the adaptation of new name changes by clinical laboratories and clinicians be reviewed routinely by a standing committee for validation and stability over time, with reference to an open access database, wherein reasons for changes are listed in a transparent way.

Indexed as

FungiDatabases, FactualGuidelines as TopicHumansPhylogenyfunginomenclaturetaxonomy

Identifiers

PMID37882528
PMCPMC10662369
OpenAlexW4387949691

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.