Evidence map›Paper›PMID 37882526›Full record

ArticleApplied and environmental microbiology2023

Diversity at single nucleotide to pangenome scales among sulfur cycling bacteria in salt marshes.

Sherlynette Pérez Castro, Elena L Peredo, Olivia U Mason, Joseph Vineis, Jennifer L Bowen, Behzad Mortazavi, Anakha Ganesh, S Emil Ruff, Blair G Paul, Anne E Giblin and 1 more

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Complete genome sequence ofMicrobiology resource announcements · 2026
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Sherlynette Pérez Castro *The Ecosystems Center, Marine Biological Laboratory , Woods Hole, Massachusetts, USA.ORCID 0000-0002-2257-0966
Elena L Peredo *The Ecosystems Center, Marine Biological Laboratory , Woods Hole, Massachusetts, USA.ORCID 0000-0001-9691-4189
Olivia U MasonDepartment of Earth, Ocean and Atmospheric Science, Florida State University , Tallahassee, Florida, USA.ORCID 0000-0002-3027-4876
Joseph VineisDepartment of Marine and Environmental Sciences, Marine Science Center, Northeastern University , Nahant, Massachusetts, USA.ORCID 0000-0002-4101-1449
Jennifer L BowenDepartment of Marine and Environmental Sciences, Marine Science Center, Northeastern University , Nahant, Massachusetts, USA.ORCID 0000-0003-0339-1564
Behzad MortazaviDepartment of Biological Sciences, University of Alabama , Tuscaloosa, Alabama, USA.
Anakha GaneshBay Paul Center, Marine Biological Laboratory , Woods Hole, Massachusetts, USA.ORCID 0009-0005-1765-8380
S Emil RuffThe Ecosystems Center, Marine Biological Laboratory , Woods Hole, Massachusetts, USA.ORCID 0000-0002-6872-6188
Blair G PaulBay Paul Center, Marine Biological Laboratory , Woods Hole, Massachusetts, USA.ORCID 0000-0002-5738-5568
Anne E GiblinThe Ecosystems Center, Marine Biological Laboratory , Woods Hole, Massachusetts, USA.ORCID 0000-0003-3851-2178
Zoe G CardonThe Ecosystems Center, Marine Biological Laboratory , Woods Hole, Massachusetts, USA.ORCID 0000-0001-8725-7842

Funding

Gordon and Betty Moore Foundation (GBMF) 9437National Science Foundation (NSF) 1438092National Science Foundation (NSF) 1643486National Science Foundation (NSF) 2224608Simons Foundation (SF) 824763The Community Sequencing 503678The Community Sequencing Grant 504245
6 · The paper itself

Abstract

importanceSalt marshes are known for their significant carbon storage capacity, and sulfur cycling is closely linked with the ecosystem-scale carbon cycling in these ecosystems. Sulfate reducers are key for the decomposition of organic matter, and sulfur oxidizers remove toxic sulfide, supporting the productivity of marsh plants. To date, the complexity of coastal environments, heterogeneity of the rhizosphere, high microbial diversity, and uncultured majority hindered our understanding of the genomic diversity of sulfur-cycling microbes in salt marshes. Here, we use comparative genomics to overcome these challenges and provide an in-depth characterization of sulfur-cycling microbial diversity in salt marshes. We characterize communities across distinct sites and plant species and uncover extensive genomic diversity at the taxon level and specific genomic features present in MAGs affiliated with uncultivated sulfur-cycling lineages. Our work provides insights into the partnerships in salt marshes and a roadmap for multiscale analyses of diversity in complex biological systems.

Indexed as

EcosystemWetlandsBacteriaCarbonNucleotidesPlantsSulfurCarbonNucleotidesSulfurdiversity-generating retroelementpangenomicssingle-nucleotide polymorphismsite-specific genetic diversitysulfate-reducing bacteriasulfur-oxidizing bacteria

Identifiers

PMID37882526
PMCPMC10686091

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.