Evidence map›Paper›PMID 37880593›Full record

ArticleBMC plant biology2023

Genome-wide identification of nucleotide-binding domain leucine-rich repeat (NLR) genes and their association with green peach aphid (Myzus persicae) resistance in peach.

Haixiang Yu, Xuelian Wu, Jiahui Liang, Ziying Han, Yuansong Xiao, Hao Du, Yihua Liu, Jian Guo, Futian Peng

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC plant biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Haixiang YuCollege of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an, Shandong, China.
Xuelian WuCollege of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an, Shandong, China.
Jiahui LiangCollege of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an, Shandong, China.
Ziying HanCollege of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an, Shandong, China.
Yuansong XiaoCollege of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an, Shandong, China.
Hao DuCollege of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an, Shandong, China.
Yihua LiuCollege of Agriculture and Forestry Sciences, Linyi University, Linyi, Shandong, 276000, China.
Jian GuoCollege of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an, Shandong, China. guojian@sdau.edu.cn.
Futian PengCollege of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an, Shandong, China. pft@sdau.edu.cn.
Shandong Agricultural University · CNLinyi University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Resistance genes (R genes) are a class of genes that are immune to a wide range of diseases and pests. In planta, NLR genes are essential components of the innate immune system. Currently, genes belonging to NLR family have been found in a number of plant species, but little is known in peach. Here, 286 NLR genes were identified on peach genome by using their homologous genes in Arabidopsis thaliana as queries. These 286 NLR genes contained at least one NBS domain and LRR domain. Phylogenetic and N-terminal domain analysis showed that these NLRs could be separated into four subfamilies (I-IV) and their promoters contained many cis-elements in response to defense and phytohormones. In addition, transcriptome analysis showed that 22 NLR genes were up-regulated after infected by Green Peach Aphid (GPA), and showed different expression patterns. This study clarified the NLR gene family and their potential functions in aphid resistance process. The candidate NLR genes might be useful in illustrating the mechanism of aphid resistance in peach.

Indexed as

AphidsArabidopsisArabidopsis ProteinsAnimalsLeucineNucleotidesPhylogenyArabidopsis ProteinsLeucineNucleotidesAphidGenome-wide analysisNucleotide-binding domain leucine-rich repeat (NLR) genesPeach

Identifiers

PMID37880593
PMCPMC10598982
OpenAlexW4387939872

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.