Evidence map›Paper›PMID 37878110›Full record

ArticleArchives of virology2023

Metavirome-assembled genome sequence of a new aquatic RNA virus expands the genus Locarnavirus.

Fangxin Lu, Shuang Wu, Yimin Ni, Yongxin Yu, Songzhe Fu, Yongjie Wang

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of virology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Fangxin LuCollege of Food Science and Technology, Shanghai Ocean University, Shanghai, China.
Shuang WuCollege of Food Science and Technology, Shanghai Ocean University, Shanghai, China.
Yimin NiCollege of Food Science and Technology, Shanghai Ocean University, Shanghai, China.
Yongxin YuCollege of Food Science and Technology, Shanghai Ocean University, Shanghai, China.
Songzhe FuKey Laboratory of Environment Controlled Aquaculture (KLECA), Ministry of Education, Dalian Ocean University, Dalian, China.
Yongjie WangCollege of Food Science and Technology, Shanghai Ocean University, Shanghai, China. yjwang@shou.edu.cn.ORCID http://orcid.org/0000-0002-7209-585X
Shanghai Ocean University · CNDalian Ocean University · CNQingdao National Laboratory for Marine Science and Technology · CN

Funding

National Natural Science Foundation of China 41376135
6 · The paper itself

Abstract

RNA viruses in marine environments have long been recognized as major players in the virosphere. In this study, the complete genome sequence of an RNA virus from Yangshan Harbor, named marine RNA virus Yangshan-LWW (YS-LWW), was obtained based on metavirome assembly. The genome of YS-LWW is 8839 nt in length and contains two open reading frames (ORFs). Both RdRP- and whole-genome-based phylogenetic analysis showed that YS-LWW, together with 45 viral isolates with sequences in public datasets, represents a new species in the genus Locarnavirus of the family Marnaviridae. PCR and public dataset mining indicate that YS-LWW and YS-LWW-like viruses have been widely detected in coastal and freshwater environments, suggesting that they might play a significant role in aquatic ecosystems.

Indexed as

EcosystemRNA VirusesOpen Reading FramesPhylogenyPolymerase Chain ReactionLocarnavirusMarine RNA virusPhylogenyTaxonomy

Identifiers

PMID37878110
OpenAlexW4387931489

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.