Evidence map›Paper›PMID 37876627›Full record

ArticleBayesian analysis2022

Perfect Sampling of the Posterior in the Hierarchical Pitman-Yor Process.

Sergio Bacallado, Stefano Favaro, Samuel Power, Lorenzo Trippa

Open access · diamondAbstract read
In one paragraph

Article in Bayesian analysis, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 3 countries.

Sergio BacalladoStatistical Laboratory, University of Cambridge.
Stefano FavaroDepartment of Economics and Statistics, University of Torino and Collegio Carlo Alberto.
Samuel PowerStatistical Laboratory, University of Cambridge.
Lorenzo TrippaDepartment of Biostatistics, Dana-Farber Cancer Institute and Harvard School of Public Health.
University of Cambridge · GBDana-Farber Cancer Institute · USFondazione Eni Enrico Mattei · IT

Funding

Statistical Methods and Validation Analyses for the Integration of External Data in Clinical TrialsR01LM013352 · NLM · DANA-FARBER CANCER INST · PI TRIPPA, LORENZO · 2021 to 2024
$1.5M
NLM NIH HHS R01 LM013352
6 · The paper itself

Abstract

The predictive probabilities of the hierarchical Pitman-Yor process are approximated through Monte Carlo algorithms that exploits the Chinese Restaurant Franchise (CRF) representation. However, in order to simulate the posterior distribution of the hierarchical Pitman-Yor process, a set of auxiliary variables representing the arrangement of customers in tables of the CRF must be sampled through Markov chain Monte Carlo. This paper develops a perfect sampler for these latent variables employing ideas from the Propp-Wilson algorithm and evaluates its average running time by extensive simulations. The simulations reveal a significant dependence of running time on the parameters of the model, which exhibits sharp transitions. The algorithm is compared to simpler Gibbs sampling procedures, as well as a procedure for unbiased Monte Carlo estimation proposed by Glynn and Rhee. We illustrate its use with an example in microbial genomics studies.

Indexed as

Bayesian nonparametricsGibbs samplinghierarchical Pitman–Yor processperfect samplingspecies samplingunbiased Monte Carlo estimation

Identifiers

PMID37876627
PMCPMC10597554
OpenAlexW3157648457

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.