Evidence map›Paper›PMID 37872316›Full record

ArticleNature immunology2023

Global and cell type-specific immunological hallmarks of severe dengue progression identified via a systems immunology approach.

Luca Ghita, Zhiyuan Yao, Yike Xie, Veronica Duran, Halise Busra Cagirici, Jerome Samir, Ilham Osman, David Esteban Rebellón-Sánchez, Olga Lucia Agudelo-Rojas, Ana Maria Sanz and 14 more

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
13.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 48 citations in OpenAlex.

  1. Review
  2. Article
  3. Observational
  4. Article
  5. Article
  6. Article
  7. Article
  8. Development of a pediatric immune cell atlas and characterization of CD4+ T cells in food allergy.Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology · 2026
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Dengue Dilemma: Navigating Cross-Reactivity and Immune Challenges.Current topics in microbiology and immunology · 2026
    Review
  14. Article
  15. Review
  16. Dengue and severe dengue.Clinical microbiology reviews · 2025
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 4 institutions in 3 countries.

Luca Ghita *Division of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA.
Zhiyuan Yao *Division of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA.
Yike Xie *School of Clinical Medicine, UNSW Sydney, Sydney, New South Wales, Australia.
Veronica Duran *Division of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA.
Halise Busra CagiriciDivision of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0002-0784-9803
Jerome SamirSchool of Biomedical Sciences, UNSW Sydney, Sydney, New South Wales, Australia.
Ilham OsmanDivision of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA.
David Esteban Rebellón-SánchezClinical Research Center, Fundación Valle del Lili, Cali, Colombia.ORCID 0000-0002-9680-9108
Olga Lucia Agudelo-RojasClinical Research Center, Fundación Valle del Lili, Cali, Colombia.
Ana Maria SanzClinical Research Center, Fundación Valle del Lili, Cali, Colombia.
Malaya Kumar SahooDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0001-9837-4032
Makeda L RobinsonDivision of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA.
Rosa Margarita Gelvez-RamirezCentro de Atención y Diagnóstico de Enfermedades Infecciosas (CDI/Fundacion INFOVIDA), Bucaramanga, Colombia.
Nathalia BuenoCentro de Atención y Diagnóstico de Enfermedades Infecciosas (CDI/Fundacion INFOVIDA), Bucaramanga, Colombia.
Fabio LucianiSchool of Biomedical Sciences, UNSW Sydney, Sydney, New South Wales, Australia.ORCID 0000-0003-0666-6324
Benjamin A PinskyDivision of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0001-8751-4810
Jose G MontoyaPalo Alto Medical Foundation and Dr. Jack S. Remington Laboratory for Speciality Diagnostics, Palo Alto, CA, USA.
Maria Isabel Estupiñan-CardenasCentro de Atención y Diagnóstico de Enfermedades Infecciosas (CDI/Fundacion INFOVIDA), Bucaramanga, Colombia.
Luis Angel Villar-CentenoCentro de Atención y Diagnóstico de Enfermedades Infecciosas (CDI/Fundacion INFOVIDA), Bucaramanga, Colombia.
Elsa Marina Rojas-GarridoCentro de Atención y Diagnóstico de Enfermedades Infecciosas (CDI/Fundacion INFOVIDA), Bucaramanga, Colombia.
Fernando RossoClinical Research Center, Fundación Valle del Lili, Cali, Colombia.
Stephen R QuakeChan Zuckerberg Biohub-San Francisco, San Francisco, CA, USA.
Fabio Zanini *School of Clinical Medicine, UNSW Sydney, Sydney, New South Wales, Australia. fabio.zanini@unsw.edu.au.ORCID 0000-0001-7097-8539
Shirit Einav *Division of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA. seinav@stanford.edu.ORCID 0000-0001-6441-4171
Stanford University · USFundación Valle del Lili · COUNSW Sydney · AUChan Zuckerberg Initiative (United States) · US

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
Advancing the development of a novel class of small molecules for treating pan-coronavirus infectionsR01AI158569 · NIAID · STANFORD UNIVERSITY · PI EINAV, SHIRIT · 2021 to 2025
$3.7M
NIAID NIH HHS R01 AI158569NIAID NIH HHS U19 AI057229
6 · The paper itself

Abstract

Severe dengue (SD) is a major cause of morbidity and mortality. To define dengue virus (DENV) target cells and immunological hallmarks of SD progression in children's blood, we integrated two single-cell approaches capturing cellular and viral elements: virus-inclusive single-cell RNA sequencing (viscRNA-Seq 2) and targeted proteomics with secretome analysis and functional assays. Beyond myeloid cells, in natural infection, B cells harbor replicating DENV capable of infecting permissive cells. Alterations in cell type abundance, gene and protein expression and secretion as well as cell-cell communications point towards increased immune cell migration and inflammation in SD progressors. Concurrently, antigen-presenting cells from SD progressors demonstrate intact uptake yet impaired interferon response and antigen processing and presentation signatures, which are partly modulated by DENV. Increased activation, regulation and exhaustion of effector responses and expansion of HLA-DR-expressing adaptive-like NK cells also characterize SD progressors. These findings reveal DENV target cells in human blood and provide insight into SD pathogenesis beyond antibody-mediated enhancement.

Indexed as

DengueDengue VirusSevere DengueB-LymphocytesChildHumansKiller Cells, Natural

Identifiers

PMID37872316
PMCPMC10863980
OpenAlexW4387873895

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.