Evidence map›Paper›PMID 37872315›Full record

ArticleNature immunology2023

Fungal microbiota sustains lasting immune activation of neutrophils and their progenitors in severe COVID-19.

Takato Kusakabe, Woan-Yu Lin, Jin-Gyu Cheong, Gagandeep Singh, Arjun Ravishankar, Stephen T Yeung, Marissa Mesko, Meghan Bialt DeCelie, Guilhermina Carriche, Zhen Zhao and 14 more

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
14.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 75 citations in OpenAlex.

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  11. The gastrointestinal microbiome in critical illness: A Clinician's guide to mechanisms, emerging tools, and therapeutic questions.Critical care and resuscitation : journal of the Australasian Academy of Critical Care Medicine · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 2 institutions in 1 country.

Takato KusakabeJoan and Sanford I. Weill Department of Medicine, Weill Cornell Medicine, New York City, NY, USA.
Woan-Yu LinJoan and Sanford I. Weill Department of Medicine, Weill Cornell Medicine, New York City, NY, USA.
Jin-Gyu CheongImmunology and Microbial Pathogenesis Program, Weill Cornell Graduate School of Medical Sciences, Weill Cornell Medicine, Cornell University, New York City, NY, USA.
Gagandeep SinghDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA.ORCID 0000-0003-3260-2631
Arjun RavishankarDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York City, NY, USA.ORCID 0000-0001-8366-4838
Stephen T YeungJoan and Sanford I. Weill Department of Medicine, Weill Cornell Medicine, New York City, NY, USA.
Marissa MeskoJoan and Sanford I. Weill Department of Medicine, Weill Cornell Medicine, New York City, NY, USA.
Meghan Bialt DeCelieJoan and Sanford I. Weill Department of Medicine, Weill Cornell Medicine, New York City, NY, USA.
Guilhermina CarricheJoan and Sanford I. Weill Department of Medicine, Weill Cornell Medicine, New York City, NY, USA.
Zhen ZhaoDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York City, NY, USA.ORCID 0000-0002-9742-5982
Sophie RandDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York City, NY, USA.
Itai DoronJoan and Sanford I. Weill Department of Medicine, Weill Cornell Medicine, New York City, NY, USA.
Gregory G PutzelThe Jill Roberts Institute for Research in Inflammatory Bowel Disease (JRI), Weill Cornell Medicine, New York City, NY, USA.
Stefan WorgallImmunology and Microbial Pathogenesis Program, Weill Cornell Graduate School of Medical Sciences, Weill Cornell Medicine, Cornell University, New York City, NY, USA.
Melissa CushingDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York City, NY, USA.
Lars WestbladeDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York City, NY, USA.
Giorgio InghiramiDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York City, NY, USA.ORCID 0000-0001-5566-0864
Christopher N ParkhurstJoan and Sanford I. Weill Department of Medicine, Weill Cornell Medicine, New York City, NY, USA.
Chun-Jun GuoJoan and Sanford I. Weill Department of Medicine, Weill Cornell Medicine, New York City, NY, USA.
Michael SchotsaertDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA.ORCID 0000-0003-3156-3132
Adolfo García-SastreDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA.ORCID 0000-0002-6551-1827
Steven Z JosefowiczImmunology and Microbial Pathogenesis Program, Weill Cornell Graduate School of Medical Sciences, Weill Cornell Medicine, Cornell University, New York City, NY, USA.ORCID 0000-0001-7453-779X
Mirella SalvatoreJoan and Sanford I. Weill Department of Medicine, Weill Cornell Medicine, New York City, NY, USA.ORCID 0000-0002-8296-0376
Iliyan D IlievJoan and Sanford I. Weill Department of Medicine, Weill Cornell Medicine, New York City, NY, USA. iliev@med.cornell.edu.ORCID 0000-0003-0884-9749
Cornell University · USIcahn School of Medicine at Mount Sinai · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00014 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GARCIA-SASTRE, ADOLFO · 2021 to 2025
$62.6M
SARS-CoV adaptations through a Systems Biology Lens (SYBIL)U19AI135972 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Adolfo Garcia-Sastre · 2018 to 2026
$27.2M
Technology Development Project - Increasing the complexity of ex vivo human airway models for studying immune response to viral infectionU19AI142733 · NIAID · JACKSON LABORATORY · PI Damien Chaussabel · 2019 to 2026
$23.1M
Viral Immunity and VAccination (VIVA) Human Immunology Project Consortium (HIPC)U19AI168631 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Ana Fernandez-Sesma, Viviana A Simon · 2022 to 2026
$14.4M
Commensal fungal communities in the regulation of immunity and intestinal inflammation.R01DK113136 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI ILIYAN Dimitrov ILIEV · 2017 to 2026
$4.2M
Novel lung resident interstitial macrophage subset with distinct localization and polarizationR01AI143861 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KHANNA, KAMAL MOHAN · 2019 to 2023
$3.3M
Regulation and function of mucosal IgA immune responses to mycobiota in the gut.R01AI163007 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI ILIEV, ILIYAN DIMITROV · 2021 to 2025
$2.9M
Combined adjuvant approaches for enhancement of SARS-CoV-2 vaccine efficacyR01AI160706 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SCHOTSAERT, MICHAEL, WONG, PAMELA TINMOI · 2022 to 2025
$2.9M
Mononuclear phagocyte networks in mycobiota regulation and antifungal immunity.R01DK121977 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI ILIEV, ILIYAN DIMITROV · 2020 to 2024
$2.7M
Experimental and natural SARS-CoV-2 infection of the human pancreasR01DK130425 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI HOMANN, DIRK, SCHOTSAERT, MICHAEL · 2021 to 2023
$1.3M
Microbial Regulation of Microglial FunctionK08MH130773 · NIMH · WEILL MEDICAL COLL OF CORNELL UNIV · PI PARKHURST, CHRISTOPHER NEAL · 2022 to 2025
$782k
NCI NIH HHS P30 CA016087NIAID NIH HHS 75N93021C00014NIAID NIH HHS R01 AI143861NIAID NIH HHS R01 AI160706NIAID NIH HHS R01 AI163007NIAID NIH HHS R56 AI137157NIAID NIH HHS U19 AI135972NIAID NIH HHS U19 AI142733NIAID NIH HHS U19 AI168631NIDDK NIH HHS R01 DK113136NIDDK NIH HHS R01 DK121977NIDDK NIH HHS R01 DK130425NIMH NIH HHS K08 MH130773
6 · The paper itself

Abstract

Gastrointestinal fungal dysbiosis is a hallmark of several diseases marked by systemic immune activation. Whether persistent pathobiont colonization during immune alterations and impaired gut barrier function has a durable impact on host immunity is unknown. We found that elevated levels of Candida albicans immunoglobulin G (IgG) antibodies marked patients with severe COVID-19 (sCOVID-19) who had intestinal Candida overgrowth, mycobiota dysbiosis and systemic neutrophilia. Analysis of hematopoietic stem cell progenitors in sCOVID-19 revealed transcriptional changes in antifungal immunity pathways and reprogramming of granulocyte myeloid progenitors (GMPs) for up to a year. Mice colonized with C. albicans patient isolates experienced increased lung neutrophilia and pulmonary NETosis during severe acute respiratory syndrome coronavirus-2 infection, which were partially resolved with antifungal treatment or by interleukin-6 receptor blockade. sCOVID-19 patients treated with tocilizumab experienced sustained reductions in C. albicans IgG antibodies titers and GMP transcriptional changes. These findings suggest that gut fungal pathobionts may contribute to immune activation during inflammatory diseases, offering potential mycobiota-immune therapeutic strategies for sCOVID-19 with prolonged symptoms.

Indexed as

COVID-19MycobiomeAnimalsAntifungal AgentsCandida albicansDysbiosisHumansImmunoglobulin GMiceNeutrophilsAntifungal AgentsImmunoglobulin G

Identifiers

PMID37872315
PMCPMC10805066
OpenAlexW4387880751

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.