Evidence map›Paper›PMID 37872303›Full record

ArticleScientific reports2023

Genome-wide identification and comprehensive analysis heat shock transcription factor (Hsf) members in asparagus (Asparagus officinalis) at the seeding stage under abiotic stresses.

Caihua Li, Yuhuan Li, Zeng Zhou, Yudi Huang, Zunzun Tu, Xin Zhuo, Dingyuan Tian, Yibo Liu, Hongli Di, Ze Lin and 5 more

Abstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Genome-Wide Identification, Expression Analysis ofPlants (Basel, Switzerland) · 2026
    Article
  2. Article
  3. Article
  4. Genome-Wide Identification of thePlants (Basel, Switzerland) · 2026
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Caihua Li *Jilin Academy of Agricultural Sciences, Changchun, Jilin, China.
Yuhuan Li *Jilin Academy of Agricultural Sciences, Changchun, Jilin, China.
Zeng ZhouHeilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Yudi HuangHeilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Zunzun TuHeilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Xin ZhuoHeilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Dingyuan TianHeilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Yibo LiuHeilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Hongli DiHeilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Ze LinHeilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Mingxin ShiHeilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Xue HeHeilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Haiyu XuJilin Academy of Agricultural Sciences, Changchun, Jilin, China.
Yi ZhengJilin Academy of Agricultural Sciences, Changchun, Jilin, China.
Zhongsheng MuJilin Academy of Agricultural Sciences, Changchun, Jilin, China. muzs@163.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Heat shock transcription factors (Hsf) are pivotal as essential transcription factors. They function as direct transcriptional activators of genes regulated by thermal stress and are closely associated with various abiotic stresses. Asparagus (Asparagus officinalis) is a vegetable of considerable economic and nutritional significance, abundant in essential vitamins, minerals, and dietary fiber. Nevertheless, asparagus is sensitive to environmental stresses, and specific abiotic stresses harm its yield and quality. In this context, Hsf members have been discerned through the reference genome, and a comprehensive analysis encompassing physical and chemical attributes, evolutionary aspects, motifs, gene structure, cis-acting elements, collinearity, and expression patterns under abiotic stresses has been conducted. The findings identified 18 members, categorized into five distinct subgroups. Members within each subgroup exhibited analogous motifs, gene structures, and cis-acting elements. Collinearity analysis unveiled a noteworthy pattern, revealing that Hsf members within asparagus shared one, two, and three pairs with counterparts in Arabidopsis, Oryza sativa, and Glycine max, respectively.Furthermore, members displayed tissue-specific expression during the seedling stage, with roots emerging as viable target tissue. Notably, the expression levels of certain members underwent modification under the influence of abiotic stresses. This study establishes a foundational framework for understanding Hsf members and offers valuable insights into the potential application of molecular breeding in the context of asparagus cultivation.

Indexed as

Asparagus PlantGene Expression Regulation, PlantHeat Shock Transcription FactorsPhylogenyPlant ProteinsStress, PhysiologicalTranscription FactorsVegetablesHeat Shock Transcription FactorsPlant ProteinsTranscription Factors

Identifiers

PMID37872303
PMCPMC10593832

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.