Evidence map›Paper›PMID 37872172›Full record

ArticleNature communications2023

Profiling of the Helicobacter pylori redox switch HP1021 regulon using a multi-omics approach.

Mateusz Noszka, Agnieszka Strzałka, Jakub Muraszko, Rafał Kolenda, Chen Meng, Christina Ludwig, Kerstin Stingl, Anna Zawilak-Pawlik

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Rethinking Oxidative Stress inLife (Basel, Switzerland) · 2026
    Review
  5. Article
  6. Managing dangerous liaisons: lessons fromJournal of bacteriology · 2026
    Review
  7. Article
  8. Review
  9. Article
  10. International journal of molecular sciences · 2024
    Review
  11. Journal of clinical biochemistry and nutrition · 2024
    Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Mateusz NoszkaDepartment of Microbiology, Hirszfeld Institute of Immunology and Experimental Therapy, Polish Academy of Sciences, Wrocław, Poland.ORCID 0000-0002-6694-1394
Agnieszka StrzałkaDepartment of Molecular Microbiology, Faculty of Biotechnology, University of Wrocław, Wrocław, Poland.ORCID 0000-0002-7092-0609
Jakub MuraszkoDepartment of Microbiology, Hirszfeld Institute of Immunology and Experimental Therapy, Polish Academy of Sciences, Wrocław, Poland.ORCID 0000-0001-7232-0298
Rafał KolendaDepartment of Biochemistry and Molecular Biology, Wrocław University of Environmental and Life Sciences, Wrocław, Poland.ORCID 0000-0002-8145-579X
Chen MengBavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University of Munich (TUM), Freising, Germany.
Christina LudwigBavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University of Munich (TUM), Freising, Germany.ORCID 0000-0002-6131-7322
Kerstin StinglDepartment of Biological Safety, National Reference Laboratory for Campylobacter, German Federal Institute for Risk Assessment, Berlin, Germany.ORCID 0000-0002-8338-717X
Anna Zawilak-PawlikDepartment of Microbiology, Hirszfeld Institute of Immunology and Experimental Therapy, Polish Academy of Sciences, Wrocław, Poland. anna.pawlik@hirszfeld.pl.ORCID 0000-0003-1824-1550

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The gastric human pathogen Helicobacter pylori has developed mechanisms to combat stress factors, including reactive oxygen species (ROS). Here, we present a comprehensive study on the redox switch protein HP1021 regulon combining transcriptomic, proteomic and DNA-protein interactions analyses. Our results indicate that HP1021 modulates H. pylori's response to oxidative stress. HP1021 controls the transcription of 497 genes, including 407 genes related to response to oxidative stress. 79 proteins are differently expressed in the HP1021 deletion mutant. HP1021 controls typical ROS response pathways (katA, rocF) and less canonical ones, particularly DNA uptake and central carbohydrate metabolism. HP1021 is a molecular regulator of competence in H. pylori, as HP1021-dependent repression of the comB DNA uptake genes is relieved under oxidative conditions, increasing natural competence. Furthermore, HP1021 controls glucose consumption by directly regulating the gluP transporter and has an important impact on maintaining the energetic balance in the cell.

Indexed as

Helicobacter InfectionsHelicobacter pyloriBacterial ProteinsDNAHumansMultiomicsOxidation-ReductionProteomicsReactive Oxygen SpeciesRegulonBacterial ProteinsDNAReactive Oxygen Species

Identifiers

PMID37872172
PMCPMC10593804

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.