Evidence map›Paper›PMID 37870748›Full record

ArticleAging2023

Integrated analysis and validation of the TRIM28-H2AX-CDK4 diagnostic model assists to predict the progression of HCC.

Qifei Tian, Guofang Lu, Ying Ma, Lingling Ma, Yulong Shang, Ni Guo, Yan Huang, Lin Zhu, Rui Du

Open access · hybridAbstract read
In one paragraph

Article in Aging, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 1 country.

Qifei TianDepartment of Gastroenterology, Dongying People’s Hospital, Dongying, Shandong 257091, China.
Guofang LuState Key Laboratory of Holistic Integrative Management of Gastrointestinal Cancers and National Clinical Research Center for Digestive Diseases, Xijing Hospital of Digestive Diseases, Fourth Military Medical University, Xi’an 710032, China.
Ying MaDepartment of Gastroenterology, 941 Hospital of PLA, Xining, Qinghai 810007, China.
Lingling MaDepartment of Gastroenterology, Dongying People’s Hospital, Dongying, Shandong 257091, China.
Yulong ShangState Key Laboratory of Holistic Integrative Management of Gastrointestinal Cancers and National Clinical Research Center for Digestive Diseases, Xijing Hospital of Digestive Diseases, Fourth Military Medical University, Xi’an 710032, China.
Ni GuoDepartment of Gastroenterology, Dongying People’s Hospital, Dongying, Shandong 257091, China.
Yan HuangDepartment of Critical Medicine, 942 Hospital of PLA, Yin Chuan, Ning Xia, China.
Lin ZhuDepartment of Gastroenterology, 941 Hospital of PLA, Xining, Qinghai 810007, China.
Rui DuInstitute for Biomedical Sciences of Pain, Tangdu Hospital, Fourth Military Medical University, Xi’an 710038, China.
Air Force Medical University · CNDongyang People's Hospital · CNQinghai No.3 People's Hospital · CN82th Hospital of Pla · CNWenzhou Medical University · CNXijing Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hepatocellular carcinoma (HCC) is the second leading cause of cancer-related mortality in the world. However, identifying key genes that can be exploited for the effective diagnosis and management of HCC remains difficult. The study aims to examine the prognostic and diagnostic value of TRIM28-H2AX-CDK4 axis in HCC. Analysis in TCGA, GSEA and Gene expression profiling interactive analysis online tools were performed to explore the expression profiles of TRIM28, H2AX and CDK4. Data demonstrating the correlation between TRIM28 expression levels and immune infiltration states or the expression of genes associated with immune checkpoints genes were exacted from TCGA and TIMER. Genetic alteration and enrichment analysis were performed using the cBioPortal and GEPIA2 tools. Finally, the expression of these proteins in HCC was then examined and validated in an independent cohort using immunohistochemistry. TRIM28 alteration exhibited co-occurrence instead of mutual exclusivity with a large number of immune checkpoint components and tumor-infiltrating immune cells, especially B cells, were found to serve roles in patients with HCC with different TRIM28 expression levels. Higher expression levels of TRIM28, H2AX and CDK4 were associated with a poorer prognosis and recurrence in patients with HCC according to TCGA, which was validated further in an independent cohort of patients with HCC. Area under curve revealed the superior predictive power of applying this three-gene signatures in this validation cohort. The diagnostic model based on this TRIM28-H2AX-CDK4 signature is efficient and provides a novel strategy for the clinical management of HCC.

Indexed as

Carcinoma, HepatocellularLiver NeoplasmsB-LymphocytesCyclin-Dependent Kinase 4Gene Expression ProfilingHumansMutationPrognosisTripartite Motif-Containing Protein 28CDK4 protein, humanCyclin-Dependent Kinase 4TRIM28 protein, humanTripartite Motif-Containing Protein 28CDK4H2AXhepatocellular carcinomaimmune statusTRIM28

Identifiers

PMID37870748
PMCPMC10781449
OpenAlexW4387822691

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.