Evidence map›Paper›PMID 37869395›Full record

ArticleRSC advances2023

Effect of DNA density immobilized on gold nanoparticles on nucleic acid detection.

Gen Hirao, Nanami Fukuzumi, Atsushi Ogawa, Tsuyoshi Asahi, Maeda Mizuo, Tamotsu Zako

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in RSC advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 11 citations in OpenAlex.

  1. Nucleic acid detection based on single-cluster analysis of cross-linking aggregates of DNA-modified gold nanoparticles using a dark-field microscope.Analytical sciences : the international journal of the Japan Society for Analytical Chemistry · 2026
    Article
  2. Article
  3. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Gen HiraoDepartment of Chemistry and Biology, Graduate School of Science and Engineering, Ehime University 2-5 Bunkyo Matsuyama Ehime 790-8577 Japan zako.tamotsu.us@ehime-u.ac.jp.
Nanami FukuzumiDepartment of Chemistry and Biology, Graduate School of Science and Engineering, Ehime University 2-5 Bunkyo Matsuyama Ehime 790-8577 Japan zako.tamotsu.us@ehime-u.ac.jp.
Atsushi OgawaProteo-Science Center, Ehime University 2-5 Bunkyo Matsuyama Ehime 790-8577 Japan.ORCID https://orcid.org/0000-0001-5240-3395
Tsuyoshi AsahiDepartment of Chemistry and Biology, Graduate School of Science and Engineering, Ehime University 2-5 Bunkyo Matsuyama Ehime 790-8577 Japan zako.tamotsu.us@ehime-u.ac.jp.
Maeda MizuoRIKEN Cluster for Pioneering Research 2-1 Hirosawa Wako Saitama 351-0198 Japan.
Tamotsu ZakoDepartment of Chemistry and Biology, Graduate School of Science and Engineering, Ehime University 2-5 Bunkyo Matsuyama Ehime 790-8577 Japan zako.tamotsu.us@ehime-u.ac.jp.ORCID https://orcid.org/0000-0001-7106-5766
Ehime University · JPPioneer (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gold nanoparticles (AuNPs) have been utilized as colorimetric biosensors, where target molecule-induced AuNP aggregation can be recognized by a colour change from red to blue. Particularly, single-stranded DNA (ssDNA)-immobilized AuNPs (ssDNA-AuNPs) have been applied to genetic diagnosis due to their rapid and sequence-specific aggregation properties. However, the effect of the density of immobilized ssDNA have not been investigated yet. In this study, we developed a method to control the amount of immobilized ssDNA by use of ethylene glycol, which is expected to control the ice crystal spacing in a freezing-thawing ssDNA-AuNP synthesis method. We also investigated the effect of the DNA density on the sensitivity of the target ssDNA detection, and found that the detection sensitivity was improved at lower DNA densities. To discuss the reason for the improved detection sensitivity, we modified the ssDNA-AuNPs with alkane thiol for better dispersion stability against salt. The results suggest that the DNA density, rather than the dispersion stability, has a significant impact on detection sensitivity.

Identifiers

PMID37869395
PMCPMC10585452
OpenAlexW4387787893

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.