Evidence map›Paper›PMID 37865673›Full record

ArticleNature communications2023

An innate granuloma eradicates an environmental pathogen using Gsdmd and Nos2.

Carissa K Harvest, Taylor J Abele, Chen Yu, Cole J Beatty, Megan E Amason, Zachary P Billman, Morgan A DePrizio, Fernando W Souza, Carolyn A Lacey, Vivien I Maltez and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. The genes zntA and zntR encoding a P-type ATPase and its activator confer zinc and cadmium resistance in Chromobacterium violaceum.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. A cytochromeApplied and environmental microbiology · 2025
    Article
  6. Article
  7. Article
  8. Chemokine expression profile of an innate granuloma.bioRxiv : the preprint server for biology · 2024
    Article
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Carissa K HarvestDepartment of Integrative Immunobiology, Duke University School of Medicine, Durham, NC, USA.
Taylor J AbeleDepartment of Integrative Immunobiology, Duke University School of Medicine, Durham, NC, USA.ORCID 0000-0002-7910-3381
Chen YuDepartment of Ophthalmology, Duke University School of Medicine, Durham, NC, USA.ORCID 0000-0001-9651-9875
Cole J BeattyDepartment of Integrative Immunobiology, Duke University School of Medicine, Durham, NC, USA.ORCID 0000-0002-2007-7035
Megan E AmasonDepartment of Integrative Immunobiology, Duke University School of Medicine, Durham, NC, USA.ORCID 0009-0000-2834-5834
Zachary P BillmanDepartment of Integrative Immunobiology, Duke University School of Medicine, Durham, NC, USA.
Morgan A DePrizioDepartment of Integrative Immunobiology, Duke University School of Medicine, Durham, NC, USA.
Fernando W SouzaDepartment of Integrative Immunobiology, Duke University School of Medicine, Durham, NC, USA.
Carolyn A LaceyDepartment of Integrative Immunobiology, Duke University School of Medicine, Durham, NC, USA.ORCID 0000-0003-3022-1712
Vivien I MaltezDepartment of Microbiology and Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Heather N LarsonDepartment of Integrative Immunobiology, Duke University School of Medicine, Durham, NC, USA.ORCID 0009-0007-2239-8274
Benjamin D McGlaughonDepartment of Microbiology and Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Daniel R SabanDepartment of Integrative Immunobiology, Duke University School of Medicine, Durham, NC, USA.
Stephanie A MontgomeryDepartment of Pathology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Edward A MiaoDepartment of Integrative Immunobiology, Duke University School of Medicine, Durham, NC, USA. edward.miao@duke.edu.ORCID 0000-0001-7295-3490

Funding

VISION RESEARCHP30EY005722 · NEI · DUKE UNIVERSITY · PI Vadim Y Arshavsky · 1985 to 2026
$19.3M
Basic Immunology Training ProgramT32AI052077 · NIAID · DUKE UNIVERSITY · PI KRANGEL, MICHAEL S · 2002 to 2024
$4.2M
Innate immune defenses against a cytosolic capsuleR01AI136920 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Edward A Miao · 2019 to 2026
$3.7M
Intestinal epithelial cell exfoliation by caspasesR01AI139304 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MIAO, EDWARD A · 2018 to 2022
$2.2M
Natural killer cell cytotoxicity against intracellular bacteriaR01AI133236 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MIAO, EDWARD A · 2018 to 2022
$2.2M
Natural killer cell cytotoxicity against intracellular bacteriaR56AI133236 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MIAO, EDWARD A · 2017 to 2017
$291k
Evaluating Velopharyngeal Function During Phonation in Children Utilizing Static MRIF31DE033236 · NIDCR · EAST CAROLINA UNIVERSITY · PI SNODGRASS, TAYLOR · 2023 to 2025
$62k
NEI NIH HHS P30 EY005722NIAID NIH HHS R01 AI133236NIAID NIH HHS R01 AI136920NIAID NIH HHS R01 AI139304NIAID NIH HHS R56 AI133236NIAID NIH HHS T32 AI052077NIDCR NIH HHS F31 DE033236
6 · The paper itself

Abstract

Granulomas often form around pathogens that cause chronic infections. Here, we discover an innate granuloma model in mice with an environmental bacterium called Chromobacterium violaceum. Granuloma formation not only successfully walls off, but also clears, the infection. The infected lesion can arise from a single bacterium that replicates despite the presence of a neutrophil swarm. Bacterial replication ceases when macrophages organize around the infection and form a granuloma. This granuloma response is accomplished independently of adaptive immunity that is typically required to organize granulomas. The C. violaceum-induced granuloma requires at least two separate defense pathways, gasdermin D and iNOS, to maintain the integrity of the granuloma architecture. This innate granuloma successfully eradicates C. violaceum infection. Therefore, this C. violaceum-induced granuloma model demonstrates that innate immune cells successfully organize a granuloma and thereby resolve infection by an environmental pathogen.

Indexed as

GranulomaNeutrophilsAnimalsGasderminsMacrophagesMiceNitric Oxide Synthase Type IIPhosphate-Binding ProteinsGasderminsGsdmd protein, mouseNitric Oxide Synthase Type IINos2 protein, mousePhosphate-Binding Proteins

Identifiers

PMID37865673
PMCPMC10590453

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.