Evidence map›Paper›PMID 37864214›Full record

ArticleBMC genomics2023

Transcriptome and metabolome analyses revealed the response mechanism of pepper roots to Phytophthora capsici infection.

Gang Lei, Kun-Hua Zhou, Xue-Jun Chen, Yue-Qin Huang, Xin-Jie Yuan, Ge-Ge Li, Yuan-Yuan Xie, Rong Fang

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
9.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Gang Lei *Institute of Vegetables and Flowers, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200, China.
Kun-Hua Zhou *Institute of Vegetables and Flowers, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200, China.
Xue-Jun ChenInstitute of Vegetables and Flowers, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200, China.
Yue-Qin HuangInstitute of Vegetables and Flowers, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200, China.
Xin-Jie YuanInstitute of Vegetables and Flowers, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200, China.
Ge-Ge LiInstitute of Vegetables and Flowers, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200, China.
Yuan-Yuan XieInstitute of Vegetables and Flowers, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200, China.
Rong FangInstitute of Vegetables and Flowers, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200, China. fangrong2020@163.com.
Jiangxi Academy of Agricultural Sciences · CNInstitute of Vegetables and Flowers · CN

Funding

China Agriculture Research System CARS-24-G-08Jiangxi Agriculture Research System JXARS-6Science Foundation for Young Scholars of Jiangxi Province 20202BABL215012Science Foundation for Young Scholars of Jiangxi Province 20212BAB215029
6 · The paper itself

Abstract

backgroundPhytophthora root rot caused by the oomycete Phytophthora capsici is the most devastating disease in pepper production worldwide, and current management strategies have not been effective in preventing this disease. Therefore, the use of resistant varieties was regarded as an important part of disease management of P. capsici. However, our knowledge of the molecular mechanisms underlying the defense response of pepper roots to P. capsici infection is limited.

methodsA comprehensive transcriptome and metabolome approaches were used to dissect the molecular response of pepper to P. capsici infection in the resistant genotype A204 and the susceptible genotype A198 at 0, 24 and 48 hours post-inoculation (hpi).

resultsMore genes and metabolites were induced at 24 hpi in A204 than A198, suggesting the prompt activation of defense responses in the resistant genotype, which can attribute two proteases, subtilisin-like protease and xylem cysteine proteinase 1, involved in pathogen recognition and signal transduction in A204. Further analysis indicated that the resistant genotype responded to P. capsici with fine regulation by the Ca

conclusionThe candidate transcripts may provide genetic resources that may be useful in the improvement of Phytophthora root rot-resistant characters of pepper. In addition, the model proposed in this study provides new insight into the defense response against P. capsici in pepper, and enhance our current understanding of the interaction of pepper-P. capsici.

Indexed as

CapsicumPhytophthoraPiper nigrumFlavonoidsMetabolomePlant DiseasesTranscriptomeFlavonoidsCa2+Capsicum annuumFlavonoid biosynthesis pathwaysMetabolomePhytophthora capsiciSalicylic acidTranscriptome

Identifiers

PMID37864214
PMCPMC10589972
OpenAlexW4387808832

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.