Evidence map›Paper›PMID 37860809›Full record

ArticleSaudi journal of biological sciences2023

Identification of key biomarkers and associated pathways of pancreatic cancer using integrated transcriptomic and gene network analysis.

Majji Rambabu, Nagaraj Konageni, Karthick Vasudevan, K R Dasegowda, Anand Gokul, Sivaraman Jayanthi, Karunakaran Rohini

Abstract read
In one paragraph

Article in Saudi journal of biological sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Majji RambabuDepartment of Biotechnology, REVA University, Bengaluru, Karnataka, India.
Nagaraj KonageniDepartment of Biotechnology, REVA University, Bengaluru, Karnataka, India.
Karthick VasudevanDepartment of Biotechnology, REVA University, Bengaluru, Karnataka, India.
K R DasegowdaDepartment of Biotechnology, REVA University, Bengaluru, Karnataka, India.
Anand GokulDepartment of Computer Science, University of Southern California, Los Angeles, CA, USA.
Sivaraman JayanthiDepartment of Biotechnology, Vellore Institute of Technology, Vellore, Tamil Nadu, India.
Karunakaran RohiniDepartment of Bioinformatics, Saveetha School of Engineering, Saveetha Institute of Medical and Technical Sciences, Chennai, Tamil Nadu, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pancreatic cancer shows malignancy around the world standing in 4th position for causing death globally. This cancer is majorly divided into exocrine and neuroendocrine where exocrine pancreatic ductal adenocarcinoma is observed to be nearly 85% of cases. The lack of diagnosis of pancreatic cancer is considered to be one of the major drawbacks to the prognosis and treatment of pancreatic cancer patients. The survival rate after diagnosis is very low, due to the higher incidence of drug resistance to cancer which leads to an increase in the mortality rate. The transcriptome analysis for pancreatic cancer involves dataset collection from the ENA database, incorporating them into quality control analysis to the quantification process to get the summarized read counts present in collected samples and used for further differential gene expression analysis using the DESeq2 package. Additionally, explore the enriched pathways using GSEA software and represented them by utilizing the enrichment map finally, the gene network has been constructed by Cytoscape software. Furthermore, explored the hub genes that are present in the particular pathways and how they are interconnected from one pathway to another has been analyzed. Finally, we identified the

Indexed as

CytoscapeDESeq2Enrichment mapFASTQCGSEAPancreatic cancerRNA-seq

Identifiers

PMID37860809
PMCPMC10582056

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.