Evidence map›Paper›PMID 37860693›Full record

ArticleiScience2023

The SARS-CoV-2 protein ORF3c is a mitochondrial modulator of innate immunity.

Hazel Stewart, Yongxu Lu, Sarah O'Keefe, Anusha Valpadashi, Luis Daniel Cruz-Zaragoza, Hendrik A Michel, Samantha K Nguyen, George W Carnell, Nina Lukhovitskaya, Rachel Milligan and 12 more

Open access · goldAbstract read
In one paragraph

Article in iScience, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
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  6. SARS-CoV-2-derived RNA replicons as safe and effective vaccines.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
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  17. SARS-CoV-2 biology and host interactions.Nature reviews. Microbiology · 2024
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 3 countries.

Hazel StewartDepartment of Pathology, University of Cambridge, Cambridge, UK.
Yongxu LuDepartment of Pathology, University of Cambridge, Cambridge, UK.
Sarah O'KeefeFaculty of Biology, Medicine and Health, School of Biological Sciences, University of Manchester, Manchester, UK.
Anusha ValpadashiDepartment of Cellular Biochemistry, University Medical Center Göttingen, Göttingen, Germany.
Luis Daniel Cruz-ZaragozaDepartment of Cellular Biochemistry, University Medical Center Göttingen, Göttingen, Germany.
Hendrik A MichelDepartment of Pathology, University of Cambridge, Cambridge, UK.
Samantha K NguyenDepartment of Pathology, University of Cambridge, Cambridge, UK.
George W CarnellDepartment of Veterinary Medicine, University of Cambridge, Cambridge, UK.
Nina LukhovitskayaDepartment of Pathology, University of Cambridge, Cambridge, UK.
Rachel MilliganSchool of Cellular and Molecular Medicine, Faculty of Life Sciences, University of Bristol, Bristol, UK.
Yasmin AdewusiDepartment of Pathology, University of Cambridge, Cambridge, UK.
Irwin JungreisBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Valeria LullaDepartment of Pathology, University of Cambridge, Cambridge, UK.
David A MatthewsSchool of Cellular and Molecular Medicine, Faculty of Life Sciences, University of Bristol, Bristol, UK.
Stephen HighFaculty of Biology, Medicine and Health, School of Biological Sciences, University of Manchester, Manchester, UK.
Peter RehlingDepartment of Cellular Biochemistry, University Medical Center Göttingen, Göttingen, Germany.
Edward EmmottCentre for Proteome Research, Department of Biochemistry & Systems Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, UK.
Jonathan L HeeneyDepartment of Veterinary Medicine, University of Cambridge, Cambridge, UK.
Andrew D DavidsonSchool of Cellular and Molecular Medicine, Faculty of Life Sciences, University of Bristol, Bristol, UK.
James R EdgarDepartment of Pathology, University of Cambridge, Cambridge, UK.
Geoffrey L SmithDepartment of Pathology, University of Cambridge, Cambridge, UK.
Andrew E FirthDepartment of Pathology, University of Cambridge, Cambridge, UK.
University of Cambridge · GBUniversitätsmedizin Göttingen · DEUniversity of Bristol · GBUniversity of Manchester · GBBroad Institute · USUniversity of Liverpool · GB

Funding

Medical Research Council MR/W005611/1Medical Research Council MR/W025590/1
6 · The paper itself

Abstract

The SARS-CoV-2 genome encodes a multitude of accessory proteins. Using comparative genomic approaches, an additional accessory protein, ORF3c, has been predicted to be encoded within the ORF3a sgmRNA. Expression of ORF3c during infection has been confirmed independently by ribosome profiling. Despite ORF3c also being present in the 2002-2003 SARS-CoV, its function has remained unexplored. Here we show that ORF3c localizes to mitochondria, where it inhibits innate immunity by restricting IFN-β production, but not NF-κB activation or JAK-STAT signaling downstream of type I IFN stimulation. We find that ORF3c is inhibitory after stimulation with cytoplasmic RNA helicases RIG-I or MDA5 or adaptor protein MAVS, but not after TRIF, TBK1 or phospho-IRF3 stimulation. ORF3c co-immunoprecipitates with the antiviral proteins MAVS and PGAM5 and induces MAVS cleavage by caspase-3. Together, these data provide insight into an uncharacterized mechanism of innate immune evasion by this important human pathogen.

Indexed as

ImmunologyMicrobiologyMolecular biologyProteomics

Identifiers

PMID37860693
PMCPMC10583119
OpenAlexW4387124519

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.