Evidence map›Paper›PMID 37857844›Full record

ArticleNature chemistry2024

Stereocontrolled access to thioisosteres of nucleoside di- and triphosphates.

Hai-Jun Zhang, Michał Ociepa, Molhm Nassir, Bin Zheng, Sarah A Lewicki, Veronica Salmaso, Helay Baburi, Jessica Nagel, Salahuddin Mirza, Beatriz Bueschbell and 10 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 3 countries.

Hai-Jun Zhang *Department of Chemistry, Scripps Research, La Jolla, CA, USA.ORCID 0000-0002-2963-0378
Michał Ociepa *Department of Chemistry, Scripps Research, La Jolla, CA, USA.ORCID 0000-0002-7041-1695
Molhm Nassir *Department of Chemistry, Scripps Research, La Jolla, CA, USA.ORCID 0000-0002-4996-2249
Bin ZhengChemical Process Development, Bristol Myers Squibb, New Brunswick, NJ, USA.
Sarah A LewickiMolecular Recognition Section, Laboratory of Bioorganic Chemistry, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, USA.
Veronica SalmasoMolecular Recognition Section, Laboratory of Bioorganic Chemistry, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, USA.
Helay BaburiPharmaCenter Bonn, Pharmaceutical Institute, Pharmaceutical & Medicinal Chemistry, University of Bonn, Bonn, Germany.ORCID 0009-0004-5944-3399
Jessica NagelPharmaCenter Bonn, Pharmaceutical Institute, Pharmaceutical & Medicinal Chemistry, University of Bonn, Bonn, Germany.
Salahuddin MirzaPharmaCenter Bonn, Pharmaceutical Institute, Pharmaceutical & Medicinal Chemistry, University of Bonn, Bonn, Germany.
Beatriz BueschbellPharmaCenter Bonn, Pharmaceutical Institute, Pharmaceutical & Medicinal Chemistry, University of Bonn, Bonn, Germany.
Haneen Al-HroubPharmaCenter Bonn, Pharmaceutical Institute, Pharmaceutical & Medicinal Chemistry, University of Bonn, Bonn, Germany.
Olga PerzanowskaDivision of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Warsaw, Poland.ORCID 0000-0003-3687-014X
Ziqin LinChemical Process Development, Bristol Myers Squibb, New Brunswick, NJ, USA.ORCID 0000-0003-0464-5263
Michael A SchmidtChemical Process Development, Bristol Myers Squibb, New Brunswick, NJ, USA.ORCID 0000-0002-4880-2083
Martin D EastgateChemical Process Development, Bristol Myers Squibb, New Brunswick, NJ, USA.
Kenneth A JacobsonMolecular Recognition Section, Laboratory of Bioorganic Chemistry, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, USA. kennethj@niddk.nih.gov.ORCID 0000-0001-8104-1493
Christa E MüllerPharmaCenter Bonn, Pharmaceutical Institute, Pharmaceutical & Medicinal Chemistry, University of Bonn, Bonn, Germany. christa.mueller@uni-bonn.de.ORCID 0000-0002-0013-6624
Joanna KowalskaDivision of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Warsaw, Poland. jkowalska@fuw.edu.pl.ORCID 0000-0002-9174-7999
Jacek JemielityCentre of New Technologies, University of Warsaw, Warsaw, Poland. j.jemielity@cent.uw.edu.pl.ORCID 0000-0001-7633-788X
Phil S BaranDepartment of Chemistry, Scripps Research, La Jolla, CA, USA. pbaran@scripps.edu.ORCID 0000-0001-9193-9053
University of Bonn · DEThe Bristol-Myers Squibb Children's Hospital · USNational Institutes of Health · USScripps Institution of Oceanography · USUniversity of Warsaw · PLScripps Research Institute · US

Funding

Development Of Drugs Acting At Adenosine ReceptorsZIADK031117 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI JACOBSON, KENNETH ALAN · 2009 to 2025
$10.4M
Development Of P2Y Receptor LigandsZIADK031116 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI JACOBSON, KENNETH ALAN · 2009 to 2025
$8.9M
Development of Drugs Acting at Ion ChannelsZIADK031127 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI JACOBSON, KENNETH ALAN · 2009 to 2025
$3.9M
Development of Drugs Acting at Ion ChannelsZ01DK031127 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI JACOBSON, KENNETH ALAN · 2007 to 2008
$385k
Deutsche Forschungsgemeinschaft (German Research Foundation) SFB 1328Intramural NIH HHS Z01 DK031127Intramural NIH HHS ZIA DK031116Intramural NIH HHS ZIA DK031117Narodowe Centrum Nauki (National Science Centre) 2019/33/B/ST4/01843U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases) ZIADK031116
6 · The paper itself

Abstract

Nucleoside diphosphates and triphosphates impact nearly every aspect of biochemistry; however, the use of such compounds as tools or medicinal leads for nucleotide-dependent enzymes and receptors is hampered by their rapid in vivo metabolism. Although a successful strategy to address the instability of the monophosphate moiety in oligonucleotide therapeutics has been accomplished by their isosteric replacement with phosphorothioates, no practical methods exist to rapidly and controllably access stereopure di- and triphosphate thioisosteres of both natural and unnatural nucleosides. Here we show how a modular, reagent-based platform can enable the stereocontrolled and scalable synthesis of a library of such molecules. This operationally simple approach provides access to pure stereoisomers of nucleoside α-thiodiphosphates and α-thiotriphosphates, as well as symmetrical or unsymmetrical dinucleoside thiodiphosphates and thiotriphosphates (including RNA cap reagents). We demonstrate that ligand-receptor interactions can be dramatically influenced by P-stereochemistry, showing that such thioisosteric replacements can have profound effects on the potency and stability of lead candidates.

Indexed as

NucleosidesNucleotidesBiochemistryPolyphosphatesNucleosidesNucleotidesPolyphosphatestriphosphoric acid

Identifiers

PMID37857844
PMCPMC11789459
OpenAlexW4387782410

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.