Evidence map›Paper›PMID 37857525›Full record

ArticleJournal for immunotherapy of cancer2023

Identification of tumor-intrinsic drivers of immune exclusion in acral melanoma.

Ryan C Augustin, Sarah Newman, Aofei Li, Marion Joy, Maureen Lyons, Mary P Pham, Peter Lucas, Katelyn Smith, Cindy Sander, Brian Isett and 6 more

Open access · goldAbstract read
In one paragraph

Article in Journal for immunotherapy of cancer, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Rapidly Evolving Pre- and Post-surgical Systemic Treatment of Melanoma.American journal of clinical dermatology · 2024
    Review
  18. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 1 country.

Ryan C AugustinUPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA.
Sarah NewmanUPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA.
Aofei LiUPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA.
Marion JoyUPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA.
Maureen LyonsUPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA.
Mary P PhamUPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA.
Peter LucasUPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA.
Katelyn SmithUPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA.
Cindy SanderUPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA.
Brian IsettUPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA.
Diwakar DavarUPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA.ORCID 0000-0002-7846-8055
Yana G NajjarUPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA.ORCID 0000-0002-0138-1664
Hassane M ZarourUPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA.
John M KirkwoodUPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA.
Jason John LukeUPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA baor@upmc.edu lukejj@upmc.edu.ORCID 0000-0002-1182-4908
Riyue BaoUPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA baor@upmc.edu lukejj@upmc.edu.ORCID 0000-0002-6105-1704
University of Pittsburgh · USUPMC Hillman Cancer Center · USMayo Clinic · US

Funding

VECTOR CORE FACILITYP30CA047904 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JOHN C. BYRD · 1988 to 2026
$158.0M
WILD TYPE P53-BASED ADJUVANT IMMUNOTHERAPY FOR SCCHNP50CA097190 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Greg M. Delgoffe · 2004 to 2026
$49.6M
Project 5: Microenvironment manipulation using anti-angiogenics to improve immunotherapy in melanomaP50CA254865 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DELGOFFE, GREG M., KIRKWOOD, JOHN MUNN · 2021 to 2025
$10.4M
NCI ET-CTN with Phase i Emphasis at UPCIUM1CA186690 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JOHN C. BYRD, Farshid Dayyani · 2014 to 2026
$9.1M
Immune Exclusion in Cancer ImmunotherapyR01DE031729 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Riyue Bao, Dan Paul Zandberg · 2022 to 2026
$3.0M
High-Throughput Computing for Genomics and Bioinformatics ResearchS10OD028483 · OD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LEE, ADRIAN V · 2021 to 2021
$574k
NCI NIH HHS P30 CA047904NCI NIH HHS P50 CA097190NCI NIH HHS P50 CA254865NCI NIH HHS UM1 CA186690NIDCR NIH HHS R01 DE031729NIH HHS S10 OD028483
6 · The paper itself

Abstract

Acral melanoma (AM) has distinct characteristics as compared with cutaneous melanoma and exhibits poor response to immune checkpoint inhibitors (ICIs). Tumor-intrinsic mechanisms of immune exclusion have been identified in many cancers but less studied in AM. We characterized clinically annotated tumors from patients diagnosed with AM at our institution in correlation with ICI response using whole transcriptome RNAseq, whole exome sequencing, CD8 immunohistochemistry, and multispectral immunofluorescence imaging. A defined interferon-γ-associated T cell-inflamed gene signature was used to categorize tumors into non-T cell-inflamed and T cell-inflamed phenotypes. In combination with AM tumors from two published studies, we systematically assessed the immune landscape of AM and detected differential gene expression and pathway activation in a non-T cell-inflamed tumor microenvironment (TME). Two single-cell(sc) RNAseq AM cohorts and 11 bulk RNAseq cohorts of various tumor types were used for independent validation on pathways associated with lack of ICI response. In total, 892 specimens were included in this study. 72.5% of AM tumors showed low expression of the T cell-inflamed gene signature, with 23.9% of total tumors categorized as the non-T cell-inflamed phenotype. Patients of low CD3

Indexed as

Carcinoma, Non-Small-Cell LungLung NeoplasmsMelanomaSkin NeoplasmsCutaneous Malignant MelanomaHumansTumor Microenvironmentimmune checkpoint inhibitorsimmunotherapymelanomatumor microenvironment

Identifiers

PMID37857525
PMCPMC10603348
OpenAlexW4387784607

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.