Evidence map›Paper›PMID 37857380›Full record

ArticleACS synthetic biology2023

Validating a Promoter Library for Application in Plasmid-Based Diatom Genetic Engineering.

Erin A Garza, Vincent A Bielinski, Josh L Espinoza, Kona Orlandi, Josefa Rivera Alfaro, Tayah M Bolt, Karen Beeri, Philip D Weyman, Christopher L Dupont

Open access · hybridAbstract read
In one paragraph

Article in ACS synthetic biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Marine drugs · 2026
    Review
  3. Review
  4. Article
  5. Article
  6. Genetic engineering in diatoms: advances and prospects.The Plant journal : for cell and molecular biology · 2025
    Review
  7. Article
  8. Comparative RNA-Seq of TenMarine drugs · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Erin A GarzaJ. Craig Venter Institute, La Jolla, California 92037, United States.ORCID 0000-0001-6988-4885
Vincent A BielinskiJ. Craig Venter Institute, La Jolla, California 92037, United States.ORCID 0000-0002-8107-8752
Josh L EspinozaJ. Craig Venter Institute, La Jolla, California 92037, United States.
Kona OrlandiJ. Craig Venter Institute, La Jolla, California 92037, United States.
Josefa Rivera AlfaroJ. Craig Venter Institute, La Jolla, California 92037, United States.ORCID 0009-0002-4924-6581
Tayah M BoltJ. Craig Venter Institute, La Jolla, California 92037, United States.
Karen BeeriJ. Craig Venter Institute, La Jolla, California 92037, United States.
Philip D WeymanJ. Craig Venter Institute, La Jolla, California 92037, United States.ORCID 0000-0001-5787-0291
Christopher L DupontJ. Craig Venter Institute, La Jolla, California 92037, United States.ORCID 0000-0002-0896-6542
J. Craig Venter Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

While diatoms are promising synthetic biology platforms, there currently exists a limited number of validated genetic regulatory parts available for genetic engineering. The standard method for diatom transformation, nonspecific introduction of DNA into chromosomes via biolistic particle bombardment, is low throughput and suffers from clonal variability and epigenetic effects. Recent developments in diatom engineering have demonstrated that autonomously replicating episomal plasmids serve as stable expression platforms for diverse gene expression technologies. These plasmids are delivered via bacterial conjugation and, when combined with modular DNA assembly technologies, provide a flexibility and speed not possible with biolistic-mediated strain generation. In order to expand the current toolbox for plasmid-based engineering in the diatom

Indexed as

DiatomsDNAGene LibraryGenetic EngineeringPlasmidsDNAdiatomepisomal gene expressionforward geneticsgenetic engineeringparts registrypromoter characterization

Identifiers

PMID37857380
PMCPMC10661051
OpenAlexW4387771340

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.