Evidence map›Paper›PMID 37856433›Full record

ArticlePloS one2023

Regulation of gene expression downstream of a novel Fgf/Erk pathway during Xenopus development.

Laura M Cowell, Michael King, Helena West, Matthew Broadsmith, Paul Genever, Mary Elizabeth Pownall, Harry V Isaacs

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Laura M CowellDepartment of Biology, University of York, Heslington, York, United Kingdom.
Michael KingDepartment of Biology, University of York, Heslington, York, United Kingdom.
Helena WestDepartment of Biology, University of York, Heslington, York, United Kingdom.ORCID 0000-0003-2120-278X
Matthew BroadsmithDepartment of Biology, University of York, Heslington, York, United Kingdom.ORCID 0000-0002-1908-609X
Paul GeneverDepartment of Biology, University of York, Heslington, York, United Kingdom.
Mary Elizabeth PownallDepartment of Biology, University of York, Heslington, York, United Kingdom.
Harry V IsaacsDepartment of Biology, University of York, Heslington, York, United Kingdom.ORCID 0000-0001-7825-536X
University of York · GB

Funding

Biotechnology and Biological Sciences Research Council BB/J014443/1Biotechnology and Biological Sciences Research Council BB/M011151/1
6 · The paper itself

Abstract

Activation of Map kinase/Erk signalling downstream of fibroblast growth factor (Fgf) tyrosine kinase receptors regulates gene expression required for mesoderm induction and patterning of the anteroposterior axis during Xenopus development. We have proposed that a subset of Fgf target genes are activated in the embyo in response to inhibition of a transcriptional repressor. Here we investigate the hypothesis that Cic (Capicua), which was originally identified as a transcriptional repressor negatively regulated by receptor tyrosine kinase/Erk signalling in Drosophila, is involved in regulating Fgf target gene expression in Xenopus. We characterise Xenopus Cic and show that it is widely expressed in the embryo. Fgf overexpression or ectodermal wounding, both of which potently activate Erk, reduce Cic protein levels in embryonic cells. In keeping with our hypothesis, we show that Cic knockdown and Fgf overexpression have overlapping effects on embryo development and gene expression. Transcriptomic analysis identifies a cohort of genes that are up-regulated by Fgf overexpression and Cic knockdown. We investigate two of these genes as putative targets of the proposed Fgf/Erk/Cic axis: fos and rasl11b, which encode a leucine zipper transcription factor and a ras family GTPase, respectively. We identify Cic consensus binding sites in a highly conserved region of intron 1 in the fos gene and Cic sites in the upstream regions of several other Fgf/Cic co-regulated genes, including rasl11b. We show that expression of fos and rasl11b is blocked in the early mesoderm when Fgf and Erk signalling is inhibited. In addition, we show that fos and rasl11b expression is associated with the Fgf independent activation of Erk at the site of ectodermal wounding. Our data support a role for a Fgf/Erk/Cic axis in regulating a subset of Fgf target genes during gastrulation and is suggestive that Erk signalling is involved in regulating Cic target genes at the site of ectodermal wounding.

Indexed as

MAP Kinase Signaling SystemReceptors, Fibroblast Growth FactorAnimalsFibroblast Growth FactorsGene Expression Regulation, DevelopmentalReceptor Protein-Tyrosine KinasesSignal TransductionTranscription FactorsXenopus laevisFibroblast Growth FactorsReceptor Protein-Tyrosine KinasesReceptors, Fibroblast Growth FactorTranscription Factors

Identifiers

PMID37856433
PMCPMC10586617
OpenAlexW4387782454

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.