Evidence map›Paper›PMID 37856334›Full record

ArticleBioinformatics (Oxford, England)2023

Cyclone: open-source package for simulation and analysis of finite dynamical systems.

Elena S Dimitrova, Adam C Knapp, Brandilyn Stigler, Michael E Stillman

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Bioinformatics (Oxford, England), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 4 institutions in 1 country.

Elena S DimitrovaMathematics Department, California Polytechnic State University, San Luis Obispo, CA 93407, United States.ORCID 0000-0001-7314-6367
Adam C KnappDepartment of MD-Pulmonary Laboratory for Systems Medicine, University of Florida, Gainesville, FL 32610, United States.ORCID 0000-0002-5719-6003
Brandilyn StiglerDepartment of Mathematics, P.O. Box 750156, Southern Methodist University, Dallas, TX 75275, United States.ORCID 0000-0001-7000-9543
Michael E StillmanDepartment of Mathematics, Cornell University, Ithaca, NY 14853, United States.ORCID 0000-0003-0078-3116
California Polytechnic State University · USCornell University · USSouthern Methodist University · USUniversity of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

motivationWhile there are software packages that analyze Boolean, ternary, or other multi-state models, none compute the complete state space of function-based models over any finite set. Results: We propose Cyclone, a simple light-weight software package which simulates the complete state space for a finite dynamical system over any finite set. AVAILABILITY AND IMPLEMENTATION: Source code is freely available at https://github.com/discretedynamics/cyclone under the Apache-2.0 license.

Indexed as

Cyclonic StormsComputer SimulationSoftware

Identifiers

PMID37856334
PMCPMC10634519
OpenAlexW4387765909

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.