Evidence map›Paper›PMID 37856025›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2024

Proximity Mapping of Ciliary Proteins by BioID.

Melissa Iazzi, Jonathan St-Germain, Saujanya Acharya, Brian Raught, Gagan D Gupta

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Melissa IazziDepartment of Chemistry and Biology, Toronto Metropolitan University, Toronto, Canada.
Jonathan St-GermainPrincess Margaret Cancer Centre, University Health Network, Toronto, Canada.
Saujanya AcharyaDepartment of Chemistry and Biology, Toronto Metropolitan University, Toronto, Canada.
Brian RaughtPrincess Margaret Cancer Centre, University Health Network, Toronto, Canada. brian.raught@uhnresearch.ca.
Gagan D GuptaDepartment of Chemistry and Biology, Toronto Metropolitan University, Toronto, Canada. gagan@torontomu.ca.
Princess Margaret Cancer Centre · CAToronto Metropolitan University · CAUniversity of Toronto · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The primary cilium is a highly conserved microtubule-based organelle present in most vertebrate cell types. Mutations in ciliary protein genes can lead to dysfunctional or absent cilia and are the cause of a large group of heterogeneous diseases known as ciliopathies. ARL13B is a member of the ARF family of regulatory GTPases and is highly enriched on the ciliary membrane. The absence of ARL13B disrupts cilia architecture and mutations have been linked to several diseases; yet there remain major gaps in our understanding of the role that ARL13B plays in primary cilia function. Here, we demonstrate how in cellulo proximity-dependent biotinylation (BioID) can be used to generate a comprehensive protein proximity map of ciliary proteins by performing BioID on N- and C-terminally BirA*-tagged ARL13B. This method can theoretically provide insight into any cilia protein, identifying key interactors that play a critical role in ciliary biology.

Indexed as

GTP PhosphohydrolasesProteinsBiotinylationCiliaMicrotubulesMutationGTP PhosphohydrolasesProteinsARL13BBioID: proximity-dependent biotin identificationCiliaCiliogenesisCiliopathyGO: gene ontology

Identifiers

PMID37856025
OpenAlexW4387764959

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.