Evidence map›Paper›PMID 37855948›Full record

ArticleAnnals of biomedical engineering2024

Examining the Potential of ChatGPT on Biomedical Information Retrieval: Fact-Checking Drug-Disease Associations.

Zhenxiang Gao, Lingyao Li, Siyuan Ma, Qinyong Wang, Libby Hemphill, Rong Xu

Abstract readLetter
PubMed Publisher
In one paragraph

Article in Annals of biomedical engineering, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Zhenxiang Gao *Center for Artificial Intelligence in Drug Discovery, School of Medicine, Case Western Reserve University, Cleveland, OH, USA.ORCID http://orcid.org/0000-0002-2223-5092
Lingyao Li *School of Information, University of Michigan, Ann Arbor, MI, USA.
Siyuan Ma *Vanderbilt University Medical Center, Nashville, TN, USA.
Qinyong WangCenter for Artificial Intelligence in Drug Discovery, School of Medicine, Case Western Reserve University, Cleveland, OH, USA.
Libby HemphillSchool of Information, University of Michigan, Ann Arbor, MI, USA.
Rong XuCenter for Artificial Intelligence in Drug Discovery, School of Medicine, Case Western Reserve University, Cleveland, OH, USA. rxx@case.edu.

Funding

Greater Southern California Node of the Clinical Trials NetworkUG1DA049435 · NIDA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI YIH-ING HSER · 2019 to 2026
$16.7M
Combine computational prediction, network analysis and genetic screening in C elegans to uncover neurodegenerative causes in Alzheimer's DiseaseR01AG061388 · NIA · CASE WESTERN RESERVE UNIVERSITY · PI CHEN, SHU G., XU, RONG · 2018 to 2022
$3.4M
An Integrated Reverse Engineering Approach Toward Rapid drug Re positioning for Alzheimer's DiseaseR01AG057557 · NIA · CASE WESTERN RESERVE UNIVERSITY · PI XU, RONG · 2017 to 2021
$2.8M
Construct large-scale phenomes of disease and drugs and develop data-driven systems approaches to understand genetic links between Alzheimer's disease and Neuropsychiatric symptomsR56AG062272 · NIA · CASE WESTERN RESERVE UNIVERSITY · PI XU, RONG · 2018 to 2019
$1.6M
Characterize multifaceted interactions between COVID-19 and alcohol use disorder based on real-time analysis of electronic health records of 62 million adult patientsR01AA029831 · NIAAA · CASE WESTERN RESERVE UNIVERSITY · PI DAVIS, PAMELA B, XU, RONG · 2021 to 2023
$1.1M
National Drug Abuse Treatment Clinical Trials Network CTN-0114National Drug Abuse Treatment Clinical Trials Network UG1DA049435NIAAA NIH HHS AA029831NIA NIH HHS AG057557NIA NIH HHS AG061388NIA NIH HHS AG062272NIA NIH HHS AG07664
6 · The paper itself

Abstract

Large language models (LLMs) such as ChatGPT have recently attracted significant attention due to their impressive performance on many real-world tasks. These models have also demonstrated the potential in facilitating various biomedical tasks. However, little is known of their potential in biomedical information retrieval, especially identifying drug-disease associations. This study aims to explore the potential of ChatGPT, a popular LLM, in discerning drug-disease associations. We collected 2694 true drug-disease associations and 5662 false drug-disease pairs. Our approach involved creating various prompts to instruct ChatGPT in identifying these associations. Under varying prompt designs, ChatGPT's capability to identify drug-disease associations with an accuracy of 74.6-83.5% and 96.2-97.6% for the true and false pairs, respectively. This study shows that ChatGPT has the potential in identifying drug-disease associations and may serve as a helpful tool in searching pharmacy-related information. However, the accuracy of its insights warrants comprehensive examination before its implementation in medical practice.

Indexed as

Information Storage and RetrievalDiseaseHumansPharmaceutical PreparationsPharmaceutical PreparationsBiomedical information retrievalChatGPTDrug-disease associationsGenerative AIPerformance evaluationPrompt design

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.