Evidence map›Paper›PMID 37855672›Full record

ArticleNucleic acids research2024

LIPID MAPS: update to databases and tools for the lipidomics community.

Matthew J Conroy, Robert M Andrews, Simon Andrews, Lauren Cockayne, Edward A Dennis, Eoin Fahy, Caroline Gaud, William J Griffiths, Geoff Jukes, Maksim Kolchin and 5 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 170 papers.

0numbers the graph read from it
0cells of the map it votes in
170citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

170 citing papers in PubMed.

  1. Trial
  2. Phospholipases: Where Do We Stand?Methods in molecular biology (Clifton, N.J.) · 2027
    Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Anabolic androgenic steroids induce distinct monoaminergic and lipidomic alterations in the male rat brain.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2026
    Article
  12. Mechanistic insight into radicalNatural product reports · 2026
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Observational
  19. Article
  20. Article

110 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Matthew J ConroySystems Immunity Research Institute, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK.ORCID 0000-0001-7297-9623
Robert M AndrewsSystems Immunity Research Institute, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK.ORCID 0000-0002-3491-2361
Simon AndrewsBabraham Institute, Babraham Research Campus, Cambridge CB22 3AT, UK.ORCID 0000-0002-5006-3507
Lauren CockayneSystems Immunity Research Institute, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK.
Edward A DennisDepartment of Pharmacology, Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093-0601, USA.ORCID 0000-0003-3738-3140
Eoin FahyDepartment of Bioengineering, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92037, USA.ORCID 0000-0003-3196-522X
Caroline GaudBabraham Institute, Babraham Research Campus, Cambridge CB22 3AT, UK.ORCID 0000-0002-0453-9260
William J GriffithsSwansea University Medical School, Singleton Park, Swansea SA2 8PP, Wales, UK.ORCID 0000-0002-4129-6616
Geoff JukesSystems Immunity Research Institute, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK.
Maksim KolchinBoehringer Ingelheim Espana SA, Carrer de Prat de la Riba, 50, 08174 Sant Cugat del Vallès, Barcelona, Spain.ORCID 0000-0002-3851-9874
Karla MendivelsoSystems Immunity Research Institute, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK.
Andrea F Lopez-ClavijoBabraham Institute, Babraham Research Campus, Cambridge CB22 3AT, UK.ORCID 0000-0002-6249-7767
Caroline ReadySystems Immunity Research Institute, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK.
Shankar SubramaniamDepartment of Bioengineering, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92037, USA.
Valerie B O'DonnellSystems Immunity Research Institute, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK.ORCID 0000-0003-4089-8460

Funding

National Metabolomics Data Repository - nextgen Metabolomics WorkbenchU2CDK119886 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUBRAMANIAM, SHANKAR · 2018 to 2021
$12.7M
Action of Lipolytic EnzymesR35GM139641 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI EDWARD A DENNIS · 2021 to 2026
$2.6M
NIDDK NIH HHS U2C DK119886NIGMS NIH HHS R35 GM139641NIH HHS U2CDK119886Wellcome TrustWellcome Trust 203014/Z/16/Z]
6 · The paper itself

Abstract

LIPID MAPS (LIPID Metabolites and Pathways Strategy), www.lipidmaps.org, provides a systematic and standardized approach to organizing lipid structural and biochemical data. Founded 20 years ago, the LIPID MAPS nomenclature and classification has become the accepted community standard. LIPID MAPS provides databases for cataloging and identifying lipids at varying levels of characterization in addition to numerous software tools and educational resources, and became an ELIXIR-UK data resource in 2020. This paper describes the expansion of existing databases in LIPID MAPS, including richer metadata with literature provenance, taxonomic data and improved interoperability to facilitate FAIR compliance. A joint project funded by ELIXIR-UK, in collaboration with WikiPathways, curates and hosts pathway data, and annotates lipids in the context of their biochemical pathways. Updated features of the search infrastructure are described along with implementation of programmatic access via API and SPARQL. New lipid-specific databases have been developed and provision of lipidomics tools to the community has been updated. Training and engagement have been expanded with webinars, podcasts and an online training school.

Indexed as

Databases, FactualLipidomicsLipidsLipid MetabolismSoftwareLipids

Identifiers

PMID37855672
PMCPMC10767878

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.