Evidence map›Paper›PMID 37854289›Full record

ArticleF1000Research2022

Manual annotation of

Chinmay P Rele, Katie M Sandlin, Wilson Leung, Laura K Reed

Open access · goldAbstract read
In one paragraph

Article in F1000Research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 23 citations in OpenAlex.

  1. Gene model for the ortholog ofbioRxiv : the preprint server for biology · 2026
    Article
  2. Gene model for the ortholog ofbioRxiv : the preprint server for biology · 2026
    Article
  3. Gene model for the ortholog ofbioRxiv : the preprint server for biology · 2026
    Article
  4. Gene model for the ortholog ofbioRxiv : the preprint server for biology · 2026
    Article
  5. Gene model for the ortholog ofbioRxiv : the preprint server for biology · 2026
    Article
  6. Gene model for the ortholog ofbioRxiv : the preprint server for biology · 2026
    Article
  7. Gene model for the ortholog ofbioRxiv : the preprint server for biology · 2026
    Article
  8. Gene model for the ortholog ofbioRxiv : the preprint server for biology · 2026
    Article
  9. Gene model for the ortholog ofbioRxiv : the preprint server for biology · 2026
    Article
  10. Gene model for the ortholog ofbioRxiv : the preprint server for biology · 2026
    Article
  11. Gene model for the ortholog ofmicroPublication biology · 2026
    Article
  12. Gene model for the ortholog ofmicroPublication biology · 2026
    Article
  13. Gene model for the ortholog ofmicroPublication biology · 2026
    Article
  14. Gene Model for the ortholog ofmicroPublication biology · 2026
    Article
  15. Gene model for the ortholog ofmicroPublication biology · 2026
    Article
  16. Gene model for the ortholog ofmicroPublication biology · 2026
    Article
  17. Gene model for the ortholog ofmicroPublication biology · 2026
    Article
  18. Gene model for the ortholog ofmicroPublication biology · 2026
    Article
  19. Gene model for the ortholog ofmicroPublication biology · 2026
    Article
  20. Gene model for the ortholog ofmicroPublication biology · 2026
    Article

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Chinmay P ReleDepartment of Biological Sciences, The University of Alabama, Tuscaloosa, Alabama, 35487, USA.ORCID 0000-0002-3473-9319
Katie M SandlinDepartment of Biological Sciences, The University of Alabama, Tuscaloosa, Alabama, 35487, USA.
Wilson LeungDepartment of Biology, Washington University in St. Louis, St. Louis, Missouri, 63130, USA.
Laura K ReedDepartment of Biological Sciences, The University of Alabama, Tuscaloosa, Alabama, 35487, USA.ORCID 0000-0002-4381-494X
University of Alabama · USWashington University in St. Louis · US

Funding

Expanding the Genomics Education Partnership: Regional Mentoring and Training Networks to Diversify Bioinformatics Education and ResearchR25GM130517 · NIGMS · UNIVERSITY OF ALABAMA IN TUSCALOOSA · PI CHALKER, DOUGLAS LEE, REED, LAURA K · 2019 to 2023
$1.9M
NIGMS NIH HHS R25 GM130517
6 · The paper itself

Abstract

Annotating the genomes of multiple species allows us to analyze the evolution of their genes. While many eukaryotic genome assemblies already include computational gene predictions, these predictions can benefit from review and refinement through manual gene annotation. The Genomics Education Partnership (GEP; https://thegep.org/) developed a structural annotation protocol for protein-coding genes that enables undergraduate student and faculty researchers to create high-quality gene annotations that can be utilized in subsequent scientific investigations. For example, this protocol has been utilized by the GEP faculty to engage undergraduate students in the comparative annotation of genes involved in the insulin signaling pathway in 27

Indexed as

DrosophilaDrosophila melanogasterAnimalsGenomeGenomicsHumansMolecular Sequence Annotationcomparative genomicsCourse-based Undergraduate Research ExperienceCUREstructural gene annotation

Identifiers

PMID37854289
PMCPMC10579860
OpenAlexW4387617846

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.