Evidence map›Paper›PMID 37854217›Full record

ArticleAmerican journal of translational research2023

Association of HLA-A, B, and C alleles and cancer susceptibility in 179 solid malignancies.

Miguel Carabaño, Tao Liu, Abraham Liu, Jim ChunHao Lee, Liang Cheng, Li-Juan Wang, Chiung-Kuei Huang, Shaolei Lu

Open access · greenAbstract read
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Article in American journal of translational research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 2 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Miguel CarabañoDepartment of Pathology and Laboratory Medicine, Alpert Medical School of Brown University Providence, RI 02903, USA.
Tao LiuDepartment of Biostatistics, Brown University Providence, RI 02912, USA.
Abraham LiuDepartment of Biostatistics, Brown University Providence, RI 02912, USA.
Jim ChunHao LeeDepartment of Pathology and Laboratory Medicine, Alpert Medical School of Brown University Providence, RI 02903, USA.
Liang ChengDepartment of Pathology and Laboratory Medicine, Alpert Medical School of Brown University Providence, RI 02903, USA.
Li-Juan WangDepartment of Pathology and Laboratory Medicine, Alpert Medical School of Brown University Providence, RI 02903, USA.
Chiung-Kuei HuangDepartment of Pathology and Laboratory Medicine, Tulane University School of Medicine New Orleans, LA 70112, USA.
Shaolei LuDepartment of Pathology and Laboratory Medicine, Alpert Medical School of Brown University Providence, RI 02903, USA.
Brown University · USTulane University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe major histocompatibility complex (MHC) genes are known to be capable of influencing the susceptibility of many cancers. All mammalian cells, including cancer cells, express MHC class I molecules consisting of human leukocyte antigens (HLA) A, B, and C. The tumor susceptibility of HLA-A, B, and C alleles has not been studied extensively in solid tumors.

methodsHLA-A, B, and C genotypes of 179 solid tumors were collected from Caris Comprehensive Tumor Profiling reports, including 45 GU, 44 GI, 28 pancreaticobiliary, 21 thoracic, 15 breast, 13 Gyn, among others. The tumors were mainly from Caucasians (82%). The HLA allele frequencies in the tumors were compared to those of respective ethnic populations in the US National Marrow Donor Program (NMDP) database. Fisher's exact tests were performed, adjusted

resultsTwenty-one alleles were not listed in the NMDP. Among them, A*11:303 alone was present in 11 carcinomas, and B*08:222 was seen in 4 tumors. Among the alleles listed in the NMDP, C*08:02, B*14:02, A*03:02, and B*44:06 were significantly associated with tumors in Caucasian Americans (PR: 2.50-170), while B*44:02 appeared protective (PR: 0.36). Alleles with less significant associations were listed.

conclusionsFrom the HLA-A, B, and C data of the 179 tumors, we identified several susceptible alleles and one protective allele. Of interest, 21 alleles were not listed in the NMDP. The limited cases prevented our analysis from identifying cancer-susceptible alleles in other races.

Indexed as

biomarkercancerHLA class I

Identifiers

PMID37854217
PMCPMC10579009
OpenAlexW4387765731

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.