Evidence map›Paper›PMID 37853347›Full record

ArticleBMC bioinformatics2023

Asterics: a simple tool for the ExploRation and Integration of omiCS data.

Élise Maigné, Céline Noirot, Julien Henry, Yaa Adu Kesewaah, Ludovic Badin, Sébastien Déjean, Camille Guilmineau, Arielle Krebs, Fanny Mathevet, Audrey Segalini and 5 more

Abstract read
In one paragraph

Article in BMC bioinformatics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Élise Maigné *Université de Toulouse, INRAE, UR MIAT, 31326, Castanet-Tolosan, France.
Céline Noirot *Université de Toulouse, INRAE, UR MIAT, 31326, Castanet-Tolosan, France.
Julien HenryUniversité de Toulouse, INRAE, UR MIAT, 31326, Castanet-Tolosan, France.
Yaa Adu KesewaahUniversité de Toulouse, INRAE, UR MIAT, 31326, Castanet-Tolosan, France.
Ludovic BadinHyphen-Stat, Toulouse, France.
Sébastien DéjeanPlateforme Biostatistique, Genotoul, Toulouse, France.
Camille GuilmineauUniversité de Toulouse, INRAE, UR MIAT, 31326, Castanet-Tolosan, France.
Arielle KrebsUniversité de Toulouse, INRAE, UR MIAT, 31326, Castanet-Tolosan, France.
Fanny MathevetUniversité de Toulouse, INRAE, UR MIAT, 31326, Castanet-Tolosan, France.
Audrey SegaliniHyphen-Stat, Toulouse, France.
Laurent ThomassinHyphen-Stat, Toulouse, France.
David ColongoHyphen-Stat, Toulouse, France.
Christine GaspinUniversité de Toulouse, INRAE, UR MIAT, 31326, Castanet-Tolosan, France.
Laurence LiaubetGenPhySE, Université de Toulouse, INRAE, ENVT, 31326, Castanet-Tolosan, France.
Nathalie VialaneixUniversité de Toulouse, INRAE, UR MIAT, 31326, Castanet-Tolosan, France. nathalie.vialaneix@inrae.fr.

Funding

Région Occitanie https://www.laregion.fr/ 20008788
6 · The paper itself

Abstract

backgroundThe rapid development of omics acquisition techniques has induced the production of a large volume of heterogeneous and multi-level omics datasets, which require specific and sometimes complex analyses to obtain relevant biological information. Here, we present ASTERICS (version 2.5), a publicly available web interface for the analyses of omics datasets.

resultsASTERICS is designed to make both standard and complex exploratory and integration analysis workflows easily available to biologists and to provide high quality interactive plots. Special care has been taken to provide a comprehensive documentation of the implemented analyses and to guide users toward sound analysis choices regarding some specific omics data. Data and analyses are organized in a comprehensive graphical workflow within ASTERICS workspace to facilitate the understanding of successive data editions and analyses leading to a given result.

conclusionASTERICS provides an easy to use platform for omics data exploration and integration. The modular organization of its open source code makes it easy to incorporate new workflows and analyses by external contributors. ASTERICS is available at https://asterics.miat.inrae.fr and can also be deployed using provided docker images.

Indexed as

SoftwareWorkflowData integrationOmicsStatistical analysesWeb user interface

Identifiers

PMID37853347
PMCPMC10583411

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.