Evidence map›Paper›PMID 37853181›Full record

ArticleCommunications biology2023

Form factor determination of biological molecules with X-ray free electron laser small-angle scattering (XFEL-SAS).

Clement E Blanchet, Adam Round, Haydyn D T Mertens, Kartik Ayyer, Melissa Graewert, Salah Awel, Daniel Franke, Katerina Dörner, Saša Bajt, Richard Bean and 30 more

Abstract read
In one paragraph

Article in Communications biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
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  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors.

Clement E Blanchet *European Molecular Biology Laboratory EMBL, Hamburg Site, c/o DESY Notkestrasse 85, 22603, Hamburg, Germany. clement.blanchet@embl-hamburg.de.ORCID http://orcid.org/0000-0003-3432-8496
Adam Round *European XFEL GmbH, Holzkoppel 4, 22869, Schenefeld, Germany. adam.round@xfel.eu.ORCID http://orcid.org/0000-0002-0723-8228
Haydyn D T MertensEuropean Molecular Biology Laboratory EMBL, Hamburg Site, c/o DESY Notkestrasse 85, 22603, Hamburg, Germany.ORCID http://orcid.org/0000-0002-5664-744X
Kartik AyyerThe Hamburg Centre for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, 22761, Hamburg, Germany.ORCID http://orcid.org/0000-0002-6881-564X
Melissa GraewertEuropean Molecular Biology Laboratory EMBL, Hamburg Site, c/o DESY Notkestrasse 85, 22603, Hamburg, Germany.ORCID http://orcid.org/0000-0001-7547-636X
Salah AwelCenter for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607, Hamburg, Germany.
Daniel FrankeEuropean Molecular Biology Laboratory EMBL, Hamburg Site, c/o DESY Notkestrasse 85, 22603, Hamburg, Germany.
Katerina DörnerEuropean XFEL GmbH, Holzkoppel 4, 22869, Schenefeld, Germany.
Saša BajtThe Hamburg Centre for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, 22761, Hamburg, Germany.ORCID http://orcid.org/0000-0002-7163-7602
Richard BeanEuropean XFEL GmbH, Holzkoppel 4, 22869, Schenefeld, Germany.
Tânia F CustódioEuropean Molecular Biology Laboratory EMBL, Hamburg Site, c/o DESY Notkestrasse 85, 22603, Hamburg, Germany.
Raphael de WijnEuropean XFEL GmbH, Holzkoppel 4, 22869, Schenefeld, Germany.ORCID http://orcid.org/0000-0002-8342-1008
E JunchengEuropean XFEL GmbH, Holzkoppel 4, 22869, Schenefeld, Germany.ORCID http://orcid.org/0000-0001-6061-5734
Alessandra HenkelCenter for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607, Hamburg, Germany.
Andrey GruzinovEuropean Molecular Biology Laboratory EMBL, Hamburg Site, c/o DESY Notkestrasse 85, 22603, Hamburg, Germany.
Cy M JeffriesEuropean Molecular Biology Laboratory EMBL, Hamburg Site, c/o DESY Notkestrasse 85, 22603, Hamburg, Germany.ORCID http://orcid.org/0000-0002-8718-7343
Yoonhee KimEuropean XFEL GmbH, Holzkoppel 4, 22869, Schenefeld, Germany.
Henry KirkwoodEuropean XFEL GmbH, Holzkoppel 4, 22869, Schenefeld, Germany.ORCID http://orcid.org/0000-0001-6792-3844
Marco KloosEuropean XFEL GmbH, Holzkoppel 4, 22869, Schenefeld, Germany.ORCID http://orcid.org/0000-0002-8745-9740
Juraj KnoškaCenter for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607, Hamburg, Germany.
Jayanath KoliyaduEuropean XFEL GmbH, Holzkoppel 4, 22869, Schenefeld, Germany.ORCID http://orcid.org/0000-0002-0245-3842
Romain LetrunEuropean XFEL GmbH, Holzkoppel 4, 22869, Schenefeld, Germany.ORCID http://orcid.org/0000-0002-0569-5193
Christian LöwEuropean Molecular Biology Laboratory EMBL, Hamburg Site, c/o DESY Notkestrasse 85, 22603, Hamburg, Germany.ORCID http://orcid.org/0000-0003-0764-7483
Jana MakroczyovaEuropean XFEL GmbH, Holzkoppel 4, 22869, Schenefeld, Germany.
Abhishek MallMax Planck Institute for the Structure and Dynamics of Matter, Luruper Chaussee 149, 22761, Hamburg, Germany.
Rob MeijersInstitute for Protein Innovation (IPI), 4 Blackfan Circle, Boston, MA, 02115, USA.
Gisel Esperanza Pena MurilloCenter for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607, Hamburg, Germany.ORCID http://orcid.org/0000-0001-7842-4987
Dominik OberthürCenter for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607, Hamburg, Germany.ORCID http://orcid.org/0000-0002-0894-9590
Ekaterina RoundEuropean XFEL GmbH, Holzkoppel 4, 22869, Schenefeld, Germany.
Carolin SeuringCentre for Structural Systems Biology (CSSB), Notkestrasse 85, D-22607, Hamburg, Germany.ORCID http://orcid.org/0000-0003-1000-0859
Marcin SikorskiEuropean XFEL GmbH, Holzkoppel 4, 22869, Schenefeld, Germany.
Patrik VagovicEuropean XFEL GmbH, Holzkoppel 4, 22869, Schenefeld, Germany.
Joana ValerioEuropean XFEL GmbH, Holzkoppel 4, 22869, Schenefeld, Germany.
Tamme WollweberThe Hamburg Centre for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, 22761, Hamburg, Germany.
Yulong ZhuangThe Hamburg Centre for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, 22761, Hamburg, Germany.
Joachim SchulzEuropean XFEL GmbH, Holzkoppel 4, 22869, Schenefeld, Germany.ORCID http://orcid.org/0000-0002-9310-8832
Heinrich HaasBioNTech SE, 55131, Mainz, Germany.ORCID http://orcid.org/0000-0002-5517-5970
Henry N ChapmanThe Hamburg Centre for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, 22761, Hamburg, Germany.ORCID http://orcid.org/0000-0002-4655-1743
Adrian P MancusoEuropean XFEL GmbH, Holzkoppel 4, 22869, Schenefeld, Germany.
Dmitri SvergunEuropean Molecular Biology Laboratory EMBL, Hamburg Site, c/o DESY Notkestrasse 85, 22603, Hamburg, Germany. dmitri.svergun@embl-hamburg.de.ORCID http://orcid.org/0000-0003-0830-5696

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Free-electron lasers (FEL) are revolutionizing X-ray-based structural biology methods. While protein crystallography is already routinely performed at FELs, Small Angle X-ray Scattering (SAXS) studies of biological macromolecules are not as prevalent. SAXS allows the study of the shape and overall structure of proteins and nucleic acids in solution, in a quasi-native environment. In solution, chemical and biophysical parameters that have an influence on the structure and dynamics of molecules can be varied and their effect on conformational changes can be monitored in time-resolved XFEL and SAXS experiments. We report here the collection of scattering form factors of proteins in solution using FEL X-rays. The form factors correspond to the scattering signal of the protein ensemble alone; the scattering contributions from the solvent and the instrument are separately measured and accurately subtracted. The experiment was done using a liquid jet for sample delivery. These results pave the way for time-resolved studies and measurements from dilute samples, capitalizing on the intense and short FEL X-ray pulses.

Indexed as

ElectronsProteinsLasersScattering, Small AngleX-Ray DiffractionX-RaysProteins

Identifiers

PMID37853181
PMCPMC10585004

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.