Evidence map›Paper›PMID 37853038›Full record

ArticleScientific data2023

Tryp: a dataset of microscopy images of unstained thick blood smears for trypanosome detection.

Esla Timothy Anzaku, Mohammed Aliy Mohammed, Utku Ozbulak, Jongbum Won, Hyesoo Hong, Janarthanan Krishnamoorthy, Sofie Van Hoecke, Stefan Magez, Arnout Van Messem, Wesley De Neve

Abstract readDataset
In one paragraph

Article in Scientific data, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Esla Timothy Anzaku *Center for Biosystems and Biotech Data Science, Ghent University Global Campus, Incheon, 21985, South Korea. eslatimothy.anzaku@ugent.be.ORCID http://orcid.org/0009-0005-7723-159X
Mohammed Aliy Mohammed *IDLab, Ghent University - imec, Technologiepark-Zwijnaarde 126, B-9052, Ghent, Belgium.ORCID http://orcid.org/0000-0003-1912-5666
Utku OzbulakCenter for Biosystems and Biotech Data Science, Ghent University Global Campus, Incheon, 21985, South Korea.
Jongbum WonCenter for Biosystems and Biotech Data Science, Ghent University Global Campus, Incheon, 21985, South Korea.
Hyesoo HongCenter for Biosystems and Biotech Data Science, Ghent University Global Campus, Incheon, 21985, South Korea.
Janarthanan KrishnamoorthySchool of Biomedical Engineering, Jimma Institute of Technology, Jimma University, Jimma, Ethiopia.
Sofie Van HoeckeIDLab, Ghent University - imec, Technologiepark-Zwijnaarde 126, B-9052, Ghent, Belgium.
Stefan MagezBiomedical Research Center, Ghent University Global Campus, Incheon, 21985, South Korea.
Arnout Van MessemUniversity of Liège, 4000, Liège, Belgium.
Wesley De NeveCenter for Biosystems and Biotech Data Science, Ghent University Global Campus, Incheon, 21985, South Korea.ORCID http://orcid.org/0000-0002-8190-3839

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Trypanosomiasis, a neglected tropical disease (NTD), challenges communities in sub-Saharan Africa and Latin America. The World Health Organization underscores the need for practical, field-adaptable diagnostics and rapid screening tools to address the negative impact of NTDs. While artificial intelligence has shown promising results in disease screening, the lack of curated datasets impedes progress. In response to this challenge, we developed the Tryp dataset, comprising microscopy images of unstained thick blood smears containing the Trypanosoma brucei brucei parasite. The Tryp dataset provides bounding box annotations for tightly enclosed regions containing the parasite for 3,085 positive images, and 93 images collected from negative blood samples. The Tryp dataset represents the largest of its kind. Furthermore, we provide a benchmark on three leading deep learning-based object detection techniques that demonstrate the feasibility of AI for this task. Overall, the availability of the Tryp dataset is expected to facilitate research advancements in diagnostic screening for this disease, which may lead to improved healthcare outcomes for the communities impacted.

Indexed as

TrypanosomaTrypanosoma brucei bruceiTrypanosomiasis, AfricanAnimalsArtificial IntelligenceHumansMicroscopyNeglected Diseases

Identifiers

PMID37853038
PMCPMC10584977

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.