Evidence map›Paper›PMID 37852757›Full record

ArticleNucleic acids research2023

ATM, KAP1 and the Epstein-Barr virus polymerase processivity factor direct traffic at the intersection of transcription and replication.

Huanzhou Xu, Ibukun A Akinyemi, John Haley, Michael T McIntosh, Sumita Bhaduri-McIntosh

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Arginine Metabolism SupportsbioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Article
  7. KAP1 in antiviral immunity: dual roles in viral silencing and immune regulation.Frontiers in cellular and infection microbiology · 2025
    Review
  8. Article
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Huanzhou XuDivision of Infectious Diseases, Department of Pediatrics, University of Florida, Gainesville, FL 32610, USA.
Ibukun A AkinyemiChild Health Research Institute, Department of Pediatrics, University of Florida, Gainesville, FL 32610, USA.
John HaleyDepartment of Pathology and Stony Brook Proteomics Center, Stony Brook University, Stony Brook, NY 11794, USA.
Michael T McIntoshChild Health Research Institute, Department of Pediatrics, University of Florida, Gainesville, FL 32610, USA.ORCID 0000-0001-5798-3050
Sumita Bhaduri-McIntoshDivision of Infectious Diseases, Department of Pediatrics, University of Florida, Gainesville, FL 32610, USA.ORCID 0000-0003-2946-9497
University of Florida · USStony Brook University · US

Funding

Synthetic lethal targeting of EBV-positive diffuse large B cell lymphomas in persons living with HIVU01CA275310 · NCI · UNIVERSITY OF FLORIDA · PI SUMITA BHADURI-MCINTOSH, Michael T McIntosh · 2022 to 2026
$3.7M
Host determinants of Epstein-Barr virus lytic cycle activationR01AI113134 · NIAID · UNIVERSITY OF FLORIDA · PI BHADURI-MCINTOSH, SUMITA · 2014 to 2018
$1.9M
NCI NIH HHS U01 CA275310NIAID NIH HHS R01 AI113134
6 · The paper itself

Abstract

The timing of transcription and replication must be carefully regulated for heavily-transcribed genomes of double-stranded DNA viruses: transcription of immediate early/early genes must decline as replication ramps up from the same genome-ensuring efficient and timely replication of viral genomes followed by their packaging by structural proteins. To understand how the prototypic DNA virus Epstein-Barr virus tackles the logistical challenge of switching from transcription to DNA replication, we examined the proteome at viral replication forks. Specifically, to transition from transcription, the viral DNA polymerase-processivity factor EA-D is SUMOylated by the epigenetic regulator and E3 SUMO-ligase KAP1/TRIM28. KAP1's SUMO2-ligase function is triggered by phosphorylation via the PI3K-related kinase ATM and the RNA polymerase II-associated helicase RECQ5 at the transcription machinery. SUMO2-EA-D then recruits the histone loader CAF1 and the methyltransferase SETDB1 to silence the parental genome via H3K9 methylation, prioritizing replication. Thus, a key viral protein and host DNA repair, epigenetic and transcription-replication interference pathways orchestrate the handover from transcription-to-replication, a fundamental feature of DNA viruses.

Indexed as

Ataxia Telangiectasia Mutated ProteinsEpstein-Barr Virus InfectionsHerpesvirus 4, HumanDNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA HelicasesDNA ReplicationHistonesHumansTripartite Motif-Containing Protein 28Ubiquitin-Protein LigasesViral ProteinsVirus ReplicationAtaxia Telangiectasia Mutated ProteinsATM protein, humanBALF5 protein, Epstein-barr virusDNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA HelicasesHistonesTRIM28 protein, humanTripartite Motif-Containing Protein 28Ubiquitin-Protein LigasesViral Proteins

Identifiers

PMID37852757
PMCPMC10639065
OpenAlexW4387729968

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.