Evidence map›Paper›PMID 37848935›Full record

ArticleJournal of translational medicine2023

Genetic assessment of pathogenic germline alterations in lysosomal genes among Asian patients with pancreatic ductal adenocarcinoma.

Youngil Koh, Hyemin Kim, So Young Joo, Seulki Song, Young Hoon Choi, Hyung Rae Kim, Byul Moon, Jamin Byun, Junshik Hong, Dong-Yeop Shin and 11 more

Open access · goldAbstract read
In one paragraph

Article in Journal of translational medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 7 institutions in 5 countries.

Youngil Koh *Department of Internal Medicine, Seoul National University Hospital, Seoul, Republic of Korea.
Hyemin Kim *Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
So Young Joo *Department of Biological Sciences, Institute of Molecular Biology and Genetics, Seoul National University, Seoul, Republic of Korea.
Seulki Song *Department of Internal Medicine, Seoul National University Hospital, Seoul, Republic of Korea.
Young Hoon Choi *Department of Internal Medicine, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea.
Hyung Rae KimDepartment of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Byul MoonAging Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea.
Jamin ByunDepartment of Internal Medicine, Seoul National University Hospital, Seoul, Republic of Korea.
Junshik HongDepartment of Internal Medicine, Seoul National University Hospital, Seoul, Republic of Korea.
Dong-Yeop ShinDepartment of Internal Medicine, Seoul National University Hospital, Seoul, Republic of Korea.
Solip ParkStructural Biology Department, Centro Nacional de Investigaciones Oncológicas (CNIO), Madrid, Spain.
Kwang Hyuck LeeDepartment of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Kyu Taek LeeDepartment of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Jong Kyun LeeDepartment of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Daechan ParkDepartment of Molecular Science and Technology, Department of Biological Sciences, Ajou University, Suwon, Republic of Korea.
Se-Hoon LeeDepartment of Hematology/Oncology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Jin-Young Jang *Departments of Surgery, Seoul National University College of Medicine, Seoul, Republic of Korea. jangjy4@snu.ac.kr.
Hyunsook Lee *Department of Biological Sciences, Institute of Molecular Biology and Genetics, Seoul National University, Seoul, Republic of Korea. hyunlee0807@gmail.com.
Jung-Ae Kim *Aging Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea. jungaekim@kribb.re.kr.
Sung-Soo Yoon *Department of Internal Medicine, Seoul National University Hospital, Seoul, Republic of Korea. ssysmc@snu.ac.kr.
Joo Kyung Park *Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea. mdsophie@gmail.com.ORCID http://orcid.org/0000-0002-9652-5287
Samsung Medical Center · KRSeoul National University Hospital · KRSeoul National University · KRKorea Research Institute of Bioscience and Biotechnology · KRAjou University · KRCatholic University of Korea · KRSpanish National Cancer Research Centre · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLysosomes are closely linked to autophagic activity, which plays a vital role in pancreatic ductal adenocarcinoma (PDAC) biology. The survival of PDAC patients is still poor, and the identification of novel genetic factors for prognosis and treatment is highly required to prevent PDAC-related deaths. This study investigated the germline variants related to lysosomal dysfunction in patients with PDAC and to analyze whether they contribute to the development of PDAC.

methodsThe germline putative pathogenic variants (PPV) in genes involved in lysosomal storage disease (LSD) was compared between patients with PDAC (n = 418) and healthy controls (n = 845) using targeted panel and whole-exome sequencing. Furthermore, pancreatic organoids from wild-type and Kras

resultsThe PPV in LSD-related genes was higher in patients with PDAC than in healthy controls (8.13 vs. 4.26%, Log

conclusionsGenetically defined lysosomal dysfunction is frequently observed in patients with young-onset PDAC. This might contribute to PDAC development by altering metabolism and impairing autophagolysosomal activity, which could be potentially implicated in therapeutic applications for PDAC.

Indexed as

Carcinoma, Pancreatic DuctalPancreatic NeoplasmsAnimalsGerm CellsHumansLysosomesMiceMiddle AgedProto-Oncogene Proteins p21(ras)Proto-Oncogene Proteins p21(ras)AutophagyGenetic sequencingGermline variantsLysosomal dysfunctionPancreatic ductal adenocarcinoma

Identifiers

PMID37848935
PMCPMC10580633
OpenAlexW4387704446

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.