Evidence map›Paper›PMID 37845773›Full record

ArticleEpigenetics & chromatin2023

Vitamin C activates young LINE-1 elements in mouse embryonic stem cells via H3K9me3 demethylation.

Kevin C L Cheng, Jennifer M Frost, Francisco J Sánchez-Luque, Marta García-Canãdas, Darren Taylor, Wan R Yang, Branavy Irayanar, Swetha Sampath, Hemalvi Patani, Karl Agger and 6 more

Open access · goldAbstract read
In one paragraph

Article in Epigenetics & chromatin, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Versatile JMJD proteins: juggling histones and much more.Trends in biochemical sciences · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 6 countries.

Kevin C L Cheng *Blizard Institute, Faculty of Medicine and Dentistry, QMUL, London, E1 2AT, UK.
Jennifer M Frost *Blizard Institute, Faculty of Medicine and Dentistry, QMUL, London, E1 2AT, UK.
Francisco J Sánchez-LuqueInstitute of Parasitology and Biomedicine "Lopez-Neyra" (IPBLN), Spanish National Research Council (CSIC), PTS Granada, Granada, Spain.
Marta García-CanãdasPfizer-University of Granada-Andalusian Government Centre for Genomics and Oncological Research (GENYO), PTS Granada, Granada, Spain.
Darren TaylorBlizard Institute, Faculty of Medicine and Dentistry, QMUL, London, E1 2AT, UK.
Wan R YangDepartment of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA.
Branavy IrayanarBlizard Institute, Faculty of Medicine and Dentistry, QMUL, London, E1 2AT, UK.
Swetha SampathBlizard Institute, Faculty of Medicine and Dentistry, QMUL, London, E1 2AT, UK.
Hemalvi PataniBarts Cancer Institute, Faculty of Medicine and Dentistry, QMUL, London, EC1M 6BQ, UK.
Karl AggerThe Novo Nordisk Foundation Center for Stem Cell Biology (DanStem), University of Copenhagen, Copenhagen, Denmark.
Kristian HelinThe Novo Nordisk Foundation Center for Stem Cell Biology (DanStem), University of Copenhagen, Copenhagen, Denmark.
Gabriella FiczBarts Cancer Institute, Faculty of Medicine and Dentistry, QMUL, London, EC1M 6BQ, UK.
Kathleen H BurnsDepartment of Oncologic Pathology, Dana-Farber Cancer Institute, Boston, MA, 02215, USA.
Adam EwingMater Research Institute, University of Queensland, Woolloongabba, QLD, 4102, Australia.
José L García-PérezPfizer-University of Granada-Andalusian Government Centre for Genomics and Oncological Research (GENYO), PTS Granada, Granada, Spain.
Miguel R BrancoBlizard Institute, Faculty of Medicine and Dentistry, QMUL, London, E1 2AT, UK. m.branco@qmul.ac.uk.
Queen Mary University of London · GBNovo Nordisk Foundation · DKPfizer-University of Granada-Junta de Andalucía Centre for Genomics and Oncological Research · ESDana-Farber Cancer Institute · USInstituto de Parasitología y Biomedicina "López - Neyra" · ESJohns Hopkins Medicine · USMater Research · AU

Funding

Biotechnology and Biological Sciences Research Council BB/T000031/1Medical Research Council MR/X008487/1Wellcome TrustWellcome Trust 101225/Z/13/Z
6 · The paper itself

Abstract

backgroundVitamin C (vitC) enhances the activity of 2-oxoglutarate-dependent dioxygenases, including TET enzymes, which catalyse DNA demethylation, and Jumonji-domain histone demethylases. The epigenetic remodelling promoted by vitC improves the efficiency of induced pluripotent stem cell derivation, and is required to attain a ground-state of pluripotency in embryonic stem cells (ESCs) that closely mimics the inner cell mass of the early blastocyst. However, genome-wide DNA and histone demethylation can lead to upregulation of transposable elements (TEs), and it is not known how vitC addition in culture media affects TE expression in pluripotent stem cells.

resultsHere we show that vitC increases the expression of several TE families, including evolutionarily young LINE-1 (L1) elements, in mouse ESCs. We find that TET activity is dispensable for L1 upregulation, and that instead it occurs largely as a result of H3K9me3 loss mediated by KDM4A/C histone demethylases. Despite increased L1 levels, we did not detect increased somatic insertion rates in vitC-treated cells. Notably, treatment of human ESCs with vitC also increases L1 protein levels, albeit through a distinct, post-transcriptional mechanism.

conclusionVitC directly modulates the expression of mouse L1s and other TEs through epigenetic mechanisms, with potential for downstream effects related to the multiple emerging roles of L1s in cellular function.

Indexed as

Ascorbic AcidMouse Embryonic Stem CellsAnimalsDemethylationDNADNA MethylationHistone DemethylasesHumansJumonji Domain-Containing Histone DemethylasesLong Interspersed Nucleotide ElementsMiceAscorbic AcidDNAHistone DemethylasesJumonji Domain-Containing Histone DemethylasesKDM4A protein, human2-oxoglutarate-dependent dioxygenasesDNA methylationEmbryonic stem cellsHistone methylationHumanLINE-1MouseRetrotranspositionVitamin C

Identifiers

PMID37845773
PMCPMC10578016
OpenAlexW4387670890

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.