Evidence map›Paper›PMID 37845489›Full record

ArticleNature immunology2023

Trimodal single-cell profiling reveals a novel pediatric CD8αα

Zachary Thomson, Ziyuan He, Elliott Swanson, Katherine Henderson, Cole Phalen, Samir Rachid Zaim, Mark-Phillip Pebworth, Lauren Y Okada, Alexander T Heubeck, Charles R Roll and 24 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Nature immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  9. Review
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  11. Multimodal analysis definesbioRxiv : the preprint server for biology · 2025
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Early-life human CD8Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  17. General and individualized changes in T cell immunity during aging.Journal of immunology (Baltimore, Md. : 1950) · 2025
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

34 authors at 6 institutions in 1 country.

Zachary ThomsonAllen Institute for Immunology, Seattle, WA, USA.
Ziyuan HeAllen Institute for Immunology, Seattle, WA, USA.ORCID 0000-0003-3556-8248
Elliott SwansonAllen Institute for Immunology, Seattle, WA, USA.ORCID 0000-0002-0351-6446
Katherine HendersonAllen Institute for Immunology, Seattle, WA, USA.
Cole PhalenAllen Institute for Immunology, Seattle, WA, USA.ORCID 0000-0002-0196-2805
Samir Rachid ZaimAllen Institute for Immunology, Seattle, WA, USA.
Mark-Phillip PebworthAllen Institute for Immunology, Seattle, WA, USA.
Lauren Y OkadaAllen Institute for Immunology, Seattle, WA, USA.ORCID 0000-0002-5691-3373
Alexander T HeubeckAllen Institute for Immunology, Seattle, WA, USA.ORCID 0000-0002-9312-4090
Charles R RollAllen Institute for Immunology, Seattle, WA, USA.
Veronica HernandezAllen Institute for Immunology, Seattle, WA, USA.
Morgan WeissAllen Institute for Immunology, Seattle, WA, USA.
Palak C GengeAllen Institute for Immunology, Seattle, WA, USA.
Julian ReadingAllen Institute for Immunology, Seattle, WA, USA.ORCID 0000-0002-8533-3992
Josephine R GilesDepartment of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania School of Medicine, Philadelphia, PA, USA.
Sasikanth ManneDepartment of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania School of Medicine, Philadelphia, PA, USA.
Jeanette DoughertyDepartment of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania School of Medicine, Philadelphia, PA, USA.
C J JasenDepartment of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania School of Medicine, Philadelphia, PA, USA.
Allison R GreenplateDepartment of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania School of Medicine, Philadelphia, PA, USA.ORCID 0000-0002-2614-3072
Lynne A BeckerAllen Institute for Immunology, Seattle, WA, USA.ORCID 0000-0003-1541-4655
Lucas T GraybuckAllen Institute for Immunology, Seattle, WA, USA.ORCID 0000-0002-8814-6818
Suhas V VasaikarAllen Institute for Immunology, Seattle, WA, USA.
Gregory L SzetoAllen Institute for Immunology, Seattle, WA, USA.
Adam K SavageAllen Institute for Immunology, Seattle, WA, USA.ORCID 0000-0003-1913-5485
Cate SpeakeCenter for Interventional Immunology, Benaroya Research Institute at Virginia Mason, Seattle, WA, USA.ORCID 0000-0003-1480-4272
Jane H BucknerCenter for Translational Immunology, Benaroya Research Institute at Virginia Mason, Seattle, WA, USA.ORCID 0000-0002-9005-1885
Xiao-Jun LiAllen Institute for Immunology, Seattle, WA, USA.ORCID 0000-0003-0832-9479
Thomas F BumolAllen Institute for Immunology, Seattle, WA, USA.
E John WherryDepartment of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania School of Medicine, Philadelphia, PA, USA.ORCID 0000-0003-0477-1956
Troy R TorgersonAllen Institute for Immunology, Seattle, WA, USA.ORCID 0000-0003-3489-5036
Laura A VellaInstitute for Immunology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Sarah E HenricksonInstitute for Immunology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Peter J Skene *Allen Institute for Immunology, Seattle, WA, USA. peter.skene@alleninstitute.org.ORCID 0000-0001-8965-5326
Claire E Gustafson *Allen Institute for Immunology, Seattle, WA, USA. claire.gustafson@alleninstitute.org.ORCID 0000-0002-1437-6709
Allen Institute for Immunology · USTranslational Therapeutics (United States) · USChildren's Hospital of Philadelphia · USVirginia Mason Medical Center · USUniversity of Minnesota · USUniversity of Washington · US

Funding

Dysregulation of Naïve T cell Quiescence during AgingK01AG068373 · NIA · STANFORD UNIVERSITY · PI GUSTAFSON, CLAIRE · 2020 to 2024
$631k
NIA NIH HHS K01 AG068373
6 · The paper itself

Abstract

Age-associated changes in the T cell compartment are well described. However, limitations of current single-modal or bimodal single-cell assays, including flow cytometry, RNA-seq (RNA sequencing) and CITE-seq (cellular indexing of transcriptomes and epitopes by sequencing), have restricted our ability to deconvolve more complex cellular and molecular changes. Here, we profile >300,000 single T cells from healthy children (aged 11-13 years) and older adults (aged 55-65 years) by using the trimodal assay TEA-seq (single-cell analysis of mRNA transcripts, surface protein epitopes and chromatin accessibility), which revealed that molecular programming of T cell subsets shifts toward a more activated basal state with age. Naive CD4

Indexed as

T-Lymphocyte SubsetsTranscriptomeAgedAgingChildEpitopesHumansSingle-Cell AnalysisEpitopes

Identifiers

PMID37845489
PMCPMC10602854
OpenAlexW4387666899

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.