Evidence map›Paper›PMID 37843548›Full record

ArticleAnalytical and bioanalytical chemistry2023

Evaluation of antibody-based single cell type imaging techniques coupled to multiplexed imaging of N-glycans and collagen peptides by matrix-assisted laser desorption/ionization mass spectrometry imaging.

Jaclyn Dunne, Jake Griner, Martin Romeo, Jade Macdonald, Carsten Krieg, Mark Lim, Gargey Yagnik, Kenneth J Rothschild, Richard R Drake, Anand S Mehta and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Analytical and bioanalytical chemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
6.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
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  11. IntegratingMolecular omics · 2025
    Article
  12. Review
  13. Spatial Multiomics Toward Understanding Neurological Systems.Journal of mass spectrometry : JMS · 2025
    Review
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Jaclyn DunneDepartment of Cell and Molecular Pharmacology & Experimental Therapeutics, Medical University of South Carolina, 173 Ashley Avenue BSB 358, Charleston, SC, 29425, USA.
Jake GrinerDepartment of Cell and Molecular Pharmacology & Experimental Therapeutics, Medical University of South Carolina, 173 Ashley Avenue BSB 358, Charleston, SC, 29425, USA.
Martin RomeoTranslational Science Laboratory, Hollings Cancer Center, Charleston, SC, 29425, USA.
Jade MacdonaldDepartment of Cell and Molecular Pharmacology & Experimental Therapeutics, Medical University of South Carolina, 173 Ashley Avenue BSB 358, Charleston, SC, 29425, USA.
Carsten KriegDepartment of Pathology and Laboratory Medicine, Medical University of South Carolina, Charleston, SC, 29425, USA.
Mark LimAmberGen, Inc, 44 Manning Road, Billerica, MA, 01821, USA.
Gargey YagnikAmberGen, Inc, 44 Manning Road, Billerica, MA, 01821, USA.
Kenneth J RothschildAmberGen, Inc, 44 Manning Road, Billerica, MA, 01821, USA.
Richard R DrakeDepartment of Cell and Molecular Pharmacology & Experimental Therapeutics, Medical University of South Carolina, 173 Ashley Avenue BSB 358, Charleston, SC, 29425, USA.
Anand S MehtaDepartment of Cell and Molecular Pharmacology & Experimental Therapeutics, Medical University of South Carolina, 173 Ashley Avenue BSB 358, Charleston, SC, 29425, USA.
Peggi M AngelDepartment of Cell and Molecular Pharmacology & Experimental Therapeutics, Medical University of South Carolina, 173 Ashley Avenue BSB 358, Charleston, SC, 29425, USA. angelp@musc.edu.
Medical University of South Carolina · USBoston University · USMUSC Hollings Cancer Center · US

Funding

Translational Science Laboratory Shared ResourceP30CA138313 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI John J Lemasters · 2009 to 2026
$42.7M
SOUTH CAROLINA COBRE IN OXIDANTS, REDOX BALANCE AND STRESS SIGNALINGP20GM103542 · NIGMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI BALL, LAUREN ELIZABETH · 2012 to 2020
$20.2M
Cellular, Biochemical and Molecular Sciences Training Program: Developing the skills and expertise needed for a changing biomedical landscapeT32GM132055 · NIGMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI Amy D Bradshaw, John P O'Bryan · 2019 to 2026
$3.9M
Deciphering the Glycan Code in Human Alzheimer’s Disease BrainR01AG078702 · NIA · UNIVERSITY OF KENTUCKY · PI Peggi M Angel, Sean Curtis Bendall · 2022 to 2026
$3.8M
Collagen Sequence Variants in Racial Disparities of Breast CancerR01CA253460 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI ANGEL, PEGGI M · 2020 to 2024
$2.6M
Photocleavable Mass-Tags for Spatial Multiomics of Alzheimer’s Brain TissueR44AG078097 · NIA · AMBERGEN, INC · PI LIM, MARK · 2022 to 2023
$2.4M
Kynurenine Pathway Regulation of CNS Senescence in Alzheimer's Disease PathologyR01AG067510 · NIA · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI HILL, WILLIAM D, MCGEE-LAWRENCE, MEGHAN E. · 2020 to 2023
$2.4M
Highly Multiplexed Nanoscale Mass Spectrometric Imaging of Cancer TissuesR44CA236097 · NCI · AMBERGEN, INC · PI LIM, MARK · 2019 to 2020
$2.0M
A Highly Multiplexed, Multiomic 3D Mouse Brain Map Using MALDI-IHCR44MH132196 · NIMH · AMBERGEN, INC · PI LIM, MARK · 2022 to 2023
$2.0M
Orbitrap Fusion Lumos ETD Mass SpectrometerS10OD025126 · OD · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI BALL, LAUREN ELIZABETH · 2018 to 2018
$991k
Orbitrap Mass SpectrometerS10OD010731 · OD · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI BALL, LAUREN ELIZABETH · 2012 to 2012
$600k
Cellular Sources of Pathological Stromal VariantsR21CA263464 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI ANGEL, PEGGI M · 2021 to 2022
$376k
NCI NIH HHS P30 CA138313NCI NIH HHS R01 CA253460NCI NIH HHS R21 CA263464NCI NIH HHS R44 CA236097NIA NIH HHS R01 AG067510NIA NIH HHS R01 AG078702NIA NIH HHS R44 AG078097NIGMS NIH HHS 5T32GM132055NIGMS NIH HHS P20 GM103542NIGMS NIH HHS P20GM103542NIGMS NIH HHS T32 GM132055NIH HHS 5R01AG067510-03NIH HHS R01CA253460NIH HHS R44AG078097NIH HHS R44CA236097NIH HHS R44MH132196NIH HHS S10 0D030212NIH HHS S10 OD010731NIH HHS S10 OD025126NIMH NIH HHS R44 MH132196
6 · The paper itself

Abstract

The integration of matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI-MSI) with single cell spatial omics methods allows for a comprehensive investigation of single cell spatial information and matrisomal N-glycan and extracellular matrix protein imaging. Here, the performance of the antibody-directed single cell workflows coupled with MALDI-MSI are evaluated. Miralys™ photocleavable mass-tagged antibody probes (MALDI-IHC, AmberGen, Inc.), GeoMx DSP® (NanoString, Inc.), and Imaging Mass Cytometry (IMC, Standard BioTools Inc.) were used in series with MALDI-MSI of N-glycans and extracellular matrix peptides on formalin-fixed paraffin-embedded tissues. Single cell omics protocols were performed before and after MALDI-MSI. The data suggests that for each modality combination, there is an optimal order for performing both techniques on the same tissue section. An overall conclusion is that MALDI-MSI studies may be completed on the same tissue section as used for antibody-directed single cell modalities. This work increases access to combined cellular and extracellular information within the tissue microenvironment to enhance research on the pathological origins of disease.

Indexed as

AntibodiesPolysaccharidesCollagenLasersPeptidesSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationAntibodiesCollagenPeptidesPolysaccharidesCollagen peptidesExtracellular matrixMass spectrometry imagingMultimodal imagingN-GlycansSingle cell spatial analysis

Identifiers

PMID37843548
PMCPMC10632234
OpenAlexW4387662142

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.