Evidence map›Paper›PMID 37842337›Full record

ArticleF1000Research2021

ELIXIR and Toxicology: a community in development.

Marvin Martens, Rob Stierum, Emma L Schymanski, Chris T Evelo, Reza Aalizadeh, Hristo Aladjov, Kasia Arturi, Karine Audouze, Pavel Babica, Karel Berka and 50 more

Abstract read
In one paragraph

Article in F1000Research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

60 authors.

Marvin MartensDepartment of Bioinformatics - BiGCaT, Maastricht University, Maastricht, 6229 ER, The Netherlands.ORCID 0000-0003-2230-0840
Rob StierumRisk Analysis for Products In Development (RAPID), Netherlands Organisation for applied scientific research TNO, Utrecht, 3584 CB, The Netherlands.
Emma L SchymanskiLuxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Belvaux, 4367, Luxembourg.ORCID 0000-0001-6868-8145
Chris T EveloDepartment of Bioinformatics - BiGCaT, Maastricht University, Maastricht, 6229 ER, The Netherlands.ORCID 0000-0002-5301-3142
Reza AalizadehLaboratory of Analytical Chemistry, Department of Chemistry, National and Kapodistrian University of Athens, Athens, 15771, Greece.
Hristo AladjovInstitute of Biophysics and Biomedical Engineering, Bulgarian Academy of Sciences, Sofia, 1113, Bulgaria.
Kasia ArturiDepartment Environmental Chemistry, Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, 8600, Switzerland.ORCID 0000-0001-5829-8370
Karine AudouzeUniversité de Paris, Paris, F-75006, France.
Pavel BabicaRECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic.
Karel BerkaDepartment of Physical Chemistry, Palacky University Olomouc, Olomouc, 77146, Czech Republic.
Jos BessemsUnit Health, VITO, Mol, 2400, Belgium.ORCID 0000-0001-5718-0733
Ludek BlahaRECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic.
Evan E BoltonNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.ORCID 0000-0002-5959-6190
Montserrat CasesChemotargets SL, Barcelona, 08028, Spain.
Dimitrios Ε DamalasLaboratory of Analytical Chemistry, Department of Chemistry, National and Kapodistrian University of Athens, Athens, 15771, Greece.ORCID 0000-0002-2997-7566
Kirtan DaveSchool of Science, GSFC University, Gujarat, 391750, India.
Marco DilgerForschungs- und Beratungsinstitut Gefahrstoffe (FoBiG) GmbH, Freiburg im Breisgau, 79106, Germany.ORCID 0000-0002-9038-3863
Thomas ExnerSeven Past Nine, Cerknica, 1380, Slovenia.
Daan P GeerkeAIMMS Division of Molecular Toxicology, Vrije Universiteit, Amsterdam, 1081 HZ, The Netherlands.
Roland GrafströmDepartment of Toxicology, Misvik Biology, Turku, 20520, Finland.
Alasdair GrayDepartment of Computer Science, Heriot-Watt University, Edinburgh, UK.
John M HancockELIXIR Hub, Wellcome Genome Campus, Cambridge, CB10 1SD, UK.
Henner HollertDepartment Evolutionary Ecology & Environmental Toxicology (E3T), Goethe-University, Frankfurt, D-60438, Germany.
Nina JeliazkovaIdeaconsult Ltd., Sofia, Bulgaria.
Danyel JennenDepartment of Toxicogenomics, Maastricht University, Maastricht, 6200 MD, The Netherlands.ORCID 0000-0002-8618-2487
Fabien JourdanMetaboHUB, French metabolomics infrastructure in Metabolomics and Fluxomics, Toulouse, France.ORCID 0000-0001-9401-2894
Pascal KahlemScientific Network Management SL, Barcelona, 08015, Spain.
Jana KlanovaRECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic.
Jos KleinjansDepartment of Toxicogenomics, Maastricht University, Maastricht, 6200 MD, The Netherlands.
Todor KondicLuxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Belvaux, 4367, Luxembourg.
Boï KoneFaculty of Pharmacy, Malaria Research and Training Center, Bamako, BP:1805, Mali.
Iseult LynchSchool of Geography, Earth and Environmental Sciences, University of Birmingham, UK, Birmingham, B15 2TT, UK.ORCID 0000-0003-4250-4584
Uko MaranInstitute of Chemistry, University of Tartu, Tartu, 50411, Estonia.
Sergio Martinez CuestaData Sciences and Quantitative Biology, Discovery Sciences, AstraZeneca, Cambridge, UK.ORCID 0000-0001-9806-2805
Hervé MénagerInstitut Français de Bioinformatique, Evry, F-91000, France.
Steffen NeumannResearch group Bioinformatics and Scientific Data, Leibniz Institute of Plant Biochemistry, Halle, 06120, Germany.ORCID 0000-0002-7899-7192
Penny NymarkInstitute of Environmental Medicine, Karolinska Institute, Stockholm, 17177, Sweden.ORCID 0000-0002-3435-7775
Herbert OberacherInstitute of Legal Medicine and Core Facility Metabolomics, Medical University of Innsbruck, Innsbruck, A-6020, Austria.
Noelia RamirezInstitut d'Investigacio Sanitaria Pere Virgili-Universitat Rovira i Virgili, Tarragona, 43007, Spain.
Sylvie RemyUnit Health, VITO, Mol, 2400, Belgium.ORCID 0000-0003-0322-9620
Philippe Rocca-SerraData Readiness Group, Department of Engineering Science, University of Oxford, Oxford, UK.
Reza M SalekInternational Agency for Research on Cancer, World Health Organisation, Lyon, 69372, France.ORCID 0000-0001-8604-1732
Brett SallachDepartment of Environment and Geography, University of York, UK, York, YO10 5NG, UK.
Susanna-Assunta SansoneData Readiness Group, Department of Engineering Science, University of Oxford, Oxford, UK.
Ferran SanzResearch Programme on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM), Department of Experimental and Health Sciences, Pompeu Fabra University, Barcelona, 08003, Spain.ORCID 0000-0002-7534-7661
Haralambos SarimveisNational Technical University of Athens, Athens, 15780, Greece.
Sirarat SarntivijaiELIXIR Hub, Wellcome Genome Campus, Cambridge, CB10 1SD, UK.ORCID 0000-0002-2548-641X
Tobias SchulzeHelmholtz Centre for Environmental Research - UFZ, Leipzig, 04318, Germany.ORCID 0000-0002-9744-8914
Jaroslav SlobodnikEnvironmental Institute, Koš, 97241, Slovakia.
Ola SpjuthDepartment of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, SE-75124, Sweden.ORCID 0000-0002-8083-2864
Jonathan TeddsELIXIR Hub, Wellcome Genome Campus, Cambridge, CB10 1SD, UK.
Nikolaos ThomaidisLaboratory of Analytical Chemistry, Department of Chemistry, National and Kapodistrian University of Athens, Athens, 15771, Greece.
Ralf J M WeberSchool of Biosciences, University of Birmingham, UK, Birmingham, B15 2TT, UK.
Gerard J P van WestenDivision of Drug Discovery and Safety, Leiden Academic Center for Drug Research, Leiden, 2333 CC, The Netherlands.ORCID 0000-0003-0717-1817
Craig E WheelockDepartment of Respiratory Medicine and Allergy, Karolinska University Hospital, Stockholm SE-141-86, Sweden.ORCID 0000-0002-8113-0653
Antony J WilliamsCenter for Computational Toxicology and Exposure, United States Environmental Protection Agency, Research Triangle Park, NC 27711, USA.ORCID 0000-0002-2668-4821
Hilda WittersUnit Health, VITO, Mol, 2400, Belgium.ORCID 0000-0002-2026-3962
Barbara ZdrazilDepartment of Pharmaceutical Sciences, University of Vienna, Vienna, 1090, Austria.ORCID 0000-0001-9395-1515
Anže ŽupaničDepartment Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, 1000, Slovenia.ORCID 0000-0003-3303-9086
Egon L WillighagenDepartment of Bioinformatics - BiGCaT, Maastricht University, Maastricht, 6229 ER, The Netherlands.ORCID 0000-0001-7542-0286

Funding

Wellcome TrustWorld Health Organization 001
6 · The paper itself

Abstract

Toxicology has been an active research field for many decades, with academic, industrial and government involvement. Modern omics and computational approaches are changing the field, from merely disease-specific observational models into target-specific predictive models. Traditionally, toxicology has strong links with other fields such as biology, chemistry, pharmacology and medicine. With the rise of synthetic and new engineered materials, alongside ongoing prioritisation needs in chemical risk assessment for existing chemicals, early predictive evaluations are becoming of utmost importance to both scientific and regulatory purposes. ELIXIR is an intergovernmental organisation that brings together life science resources from across Europe. To coordinate the linkage of various life science efforts around modern predictive toxicology, the establishment of a new ELIXIR Community is seen as instrumental. In the past few years, joint efforts, building on incidental overlap, have been piloted in the context of ELIXIR. For example, the EU-ToxRisk, diXa, HeCaToS, transQST, and the nanotoxicology community have worked with the ELIXIR TeSS, Bioschemas, and Compute Platforms and activities. In 2018, a core group of interested parties wrote a proposal, outlining a sketch of what this new ELIXIR Toxicology Community would look like. A recent workshop (held September 30th to October 1st, 2020) extended this into an ELIXIR Toxicology roadmap and a shortlist of limited investment-high gain collaborations to give body to this new community. This Whitepaper outlines the results of these efforts and defines our vision of the ELIXIR Toxicology Community and how it complements other ELIXIR activities.

Indexed as

Biological Science DisciplinesEuropeRisk AssessmentELIXIRFAIRinteroperabilityToxicology

Identifiers

PMID37842337
PMCPMC10568213

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.