Evidence map›Paper›PMID 37840454›Full record

ArticleDevelopment (Cambridge, England)2023

An interactive resource of molecular signalling in the developing human haematopoietic stem cell niche.

Edie I Crosse, Anahi Binagui-Casas, Sabrina Gordon-Keylock, Stanislav Rybtsov, Sara Tamagno, Didrik Olofsson, Richard A Anderson, Alexander Medvinsky

Open access · hybridAbstract read
In one paragraph

Article in Development (Cambridge, England), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. The evolving hematopoietic niche during development.Frontiers in molecular biosciences · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Edie I CrosseCentre for Regenerative Medicine, University of Edinburgh, Edinburgh EH16 4UU, UK.ORCID 0000-0002-0477-7365
Anahi Binagui-CasasCentre for Regenerative Medicine, University of Edinburgh, Edinburgh EH16 4UU, UK.
Sabrina Gordon-KeylockCentre for Regenerative Medicine, University of Edinburgh, Edinburgh EH16 4UU, UK.
Stanislav RybtsovCentre for Regenerative Medicine, University of Edinburgh, Edinburgh EH16 4UU, UK.ORCID 0000-0001-7786-1878
Sara TamagnoCentre for Regenerative Medicine, University of Edinburgh, Edinburgh EH16 4UU, UK.ORCID 0009-0009-0386-3788
Didrik OlofssonOmiqa Bioinformatics GmbH, Altensteinstraße 40, 14195 Berlin, Germany.
Richard A AndersonMRC Centre for Reproductive Health, University of Edinburgh, Edinburgh EH16 4TJ, UK.
Alexander MedvinskyCentre for Regenerative Medicine, University of Edinburgh, Edinburgh EH16 4UU, UK.ORCID 0000-0002-6071-7447
MRC Centre for Regenerative Medicine · GBMRC Centre for Reproductive Health · GB

Funding

Medical Research Council MR/V030043/1Wellcome TrustWellcome Trust MR/R006237/1
6 · The paper itself

Abstract

The emergence of definitive human haematopoietic stem cells (HSCs) from Carnegie Stage (CS) 14 to CS17 in the aorta-gonad-mesonephros (AGM) region is a tightly regulated process. Previously, we conducted spatial transcriptomic analysis of the human AGM region at the end of this period (CS16/CS17) and identified secreted factors involved in HSC development. Here, we extend our analysis to investigate the progression of dorso-ventral polarised signalling around the dorsal aorta over the entire period of HSC emergence. Our results reveal a dramatic increase in ventral signalling complexity from the CS13-CS14 transition, coinciding with the first appearance of definitive HSCs. We further observe stage-specific changes in signalling up to CS17, which may underpin the step-wise maturation of HSCs described in the mouse model. The data-rich resource is also presented in an online interface enabling in silico analysis of molecular interactions between spatially defined domains of the AGM region. This resource will be of particular interest for researchers studying mechanisms underlying human HSC development as well as those developing in vitro methods for the generation of clinically relevant HSCs from pluripotent stem cells.

Indexed as

Hematopoietic Stem CellsSignal TransductionAnimalsAortaCell CommunicationGene Expression ProfilingGonadsHematopoiesisHumansMesonephrosMiceAGM regionHaematopoiesisHuman developmentSingle cell RNA-seqSpatial transcriptomics

Identifiers

PMID37840454
PMCPMC10730088
OpenAlexW4387661165

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.