Evidence map›Paper›PMID 37838746›Full record

ArticleNature communications2023

A robust yeast biocontainment system with two-layered regulation switch dependent on unnatural amino acid.

Tiantian Chang, Weichao Ding, Shirui Yan, Yun Wang, Haoling Zhang, Yu Zhang, Zhi Ping, Huiming Zhang, Yijian Huang, Jiahui Zhang and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Tiantian Chang *College of Life Sciences, University of Chinese Academy of Sciences, 100049, Beijing, China.
Weichao Ding *College of Life Sciences, University of Chinese Academy of Sciences, 100049, Beijing, China.
Shirui Yan *BGI Research, Shenzhen, 518083, China.
Yun WangBGI Research, Shenzhen, 518083, China.
Haoling ZhangBGI Research, Shenzhen, 518083, China.ORCID http://orcid.org/0000-0003-4507-0339
Yu ZhangBGI Research, Shenzhen, 518083, China.ORCID http://orcid.org/0009-0003-5453-5545
Zhi PingBGI Research, Shenzhen, 518083, China.ORCID http://orcid.org/0000-0001-7114-1124
Huiming ZhangCollege of Life Sciences, University of Chinese Academy of Sciences, 100049, Beijing, China.
Yijian HuangCollege of Life Sciences, University of Chinese Academy of Sciences, 100049, Beijing, China.
Jiahui ZhangCollege of Life Sciences, University of Chinese Academy of Sciences, 100049, Beijing, China.
Dan WangGuangdong Provincial Key Laboratory of Interdisciplinary Research and Application for Data Science, BNU-HKBU United International College, Zhuhai, 519087, China.
Wenwei ZhangBGI Research, Shenzhen, 518083, China.
Xun XuBGI Research, Shenzhen, 518083, China.ORCID http://orcid.org/0000-0002-5338-5173
Yue ShenCollege of Life Sciences, University of Chinese Academy of Sciences, 100049, Beijing, China. shenyue@genomics.cn.ORCID http://orcid.org/0000-0002-3276-7295
Xian FuBGI Research, Shenzhen, 518083, China. fuxian1@genomics.cn.ORCID http://orcid.org/0000-0001-9044-8850
BGI Group (China) · CNBeijing Normal-Hong Kong Baptist University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Synthetic auxotrophy in which cell viability depends on the presence of an unnatural amino acid (unAA) provides a powerful strategy to restrict unwanted propagation of genetically modified organisms (GMOs) in open environments and potentially prevent industrial espionage. Here, we describe a generic approach for robust biocontainment of budding yeast dependent on unAA. By understanding escape mechanisms, we specifically optimize our strategies by introducing designed "immunity" to the generation of amber-suppressor tRNAs and developing the transcriptional- and translational-based biocontainment switch. We further develop a fitness-oriented screening method to easily obtain multiplex safeguard strains that exhibit robust growth and undetectable escape frequency (<~10

Indexed as

Amino AcidsSaccharomyces cerevisiaeOrganisms, Genetically ModifiedRNA, TransferAmino AcidsRNA, Transfer

Identifiers

PMID37838746
PMCPMC10576815
OpenAlexW4387640163

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.