ArticleScientific data2023
A high-quality chromosome-level wild rice genome of Oryza coarctata.
Article in Scientific data, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Genome-wide prediction of cloned disease resistance homologues across the Oryza genus.The plant genome · 2026Article
- Conserved trans-regulatory logic and evolving cis-modules drive the diversification of inducible diterpenoid biosynthetic gene clusters across the Oryzoideae.Plant & cell physiology · 2026Article
- Salt glands in exo-recretohalophytes: Development, physiological functions, and prospects for improving crop salt tolerance.Journal of integrative plant biology · 2026Review
- Harnessing salt tolerance and CScientific reports · 2026Article
- Genomic and translational insights into eIF2B-mediated salt tolerance in sea rice HD961.BMC biology · 2025Article
- Genomics-assisted breeding for designing salinity-smart future crops.Plant biotechnology journal · 2025Review
- Unlocking the potential of wild rice to bring missing nutrition to elite grains.Plant communications · 2025Review
- Learning from nature: photosynthetic traits conferring superior salt tolerance in wild ricePhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025Article
- Genus-Wide Pan-Genome Analysis ofPlants (Basel, Switzerland) · 2025Article
- Chromosome-level genome assembly of Jiaobai (Zizania latifolia, Poceace).Scientific data · 2025Article
- Evolution and diversification of the momilactone biosynthetic gene cluster in the genus Oryza.The New phytologist · 2025Article
- Development of a Rapid and Efficient Protocol for Seed Germination and Seedling Establishment ofBio-protocol · 2025Article
- Genome evolution and diversity of wild and cultivated rice species.Nature communications · 2024Article
- Streamlining of Simple Sequence Repeat Data Mining Methodologies and Pipelines for Crop Scanning.Plants (Basel, Switzerland) · 2024Review
- Comparative metabolite profiling of salt sensitivePlant-environment interactions (Hoboken, N.J.) · 2024Article
- Beyond NGS data sharing for plant ecological resilience and improvement of agronomic traits.Scientific data · 2024Article
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Authors and funding
12 authors.
Funding
Abstract
Oryza coarctata (2n = 4X = 48, KKLL) is an allotetraploid, undomesticated relative of rice and the only species in the genus Oryza with tolerance to high salinity and submergence. Therefore, it contains important stress and tolerance genes/factors for rice. The initial draft genome published was limited by data and technical restrictions, leading to an incomplete and highly fragmented assembly. This study reports a new, highly contiguous chromosome-level genome assembly and annotation of O. coarctata. PacBio high-quality HiFi reads generated 460 contigs with a total length of 573.4 Mb and an N50 of 23.1 Mb, which were assembled into scaffolds with Hi-C data, anchoring 96.99% of the assembly onto 24 chromosomes. The genome assembly comprises 45,571 genes, and repetitive content contributes 25.5% of the genome. This study provides the novel identification of the KK and LL genome types of the genus Oryza, leading to valuable insights into rice genome evolution. The chromosome-level genome assembly of O. coarctata is a valuable resource for rice research and molecular breeding.
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