Evidence map›Paper›PMID 37838705›Full record

ArticleNature communications2023

Miniature spatial transcriptomics for studying parasite-endosymbiont relationships at the micro scale.

Hailey Sounart, Denis Voronin, Yuvarani Masarapu, Matthew Chung, Sami Saarenpää, Elodie Ghedin, Stefania Giacomello

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Hailey Sounart *Department of Gene Technology, KTH Royal Institute of Technology, SciLifeLab, Stockholm, Sweden.ORCID http://orcid.org/0009-0000-5772-3961
Denis Voronin *Systems Genomics Section, Laboratory of Parasitic Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Yuvarani MasarapuDepartment of Gene Technology, KTH Royal Institute of Technology, SciLifeLab, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-3267-2085
Matthew ChungSystems Genomics Section, Laboratory of Parasitic Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Sami SaarenpääDepartment of Gene Technology, KTH Royal Institute of Technology, SciLifeLab, Stockholm, Sweden.ORCID http://orcid.org/0000-0003-4731-6857
Elodie GhedinSystems Genomics Section, Laboratory of Parasitic Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA. elodie.ghedin@nih.gov.ORCID http://orcid.org/0000-0002-1515-725X
Stefania GiacomelloDepartment of Gene Technology, KTH Royal Institute of Technology, SciLifeLab, Stockholm, Sweden. stefania.giacomello@scilifelab.se.ORCID http://orcid.org/0000-0003-0738-1574
Science for Life Laboratory · SENational Institutes of Health · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Several important human infectious diseases are caused by microscale-sized parasitic nematodes like filarial worms. Filarial worms have their own spatial tissue organization; to uncover this tissue structure, we need methods that can spatially resolve these miniature specimens. Most filarial worms evolved a mutualistic association with endosymbiotic bacteria Wolbachia. However, the mechanisms underlying the dependency of filarial worms on the fitness of these bacteria remain unknown. As Wolbachia is essential for the development, reproduction, and survival of filarial worms, we spatially explored how Wolbachia interacts with the worm's reproductive system by performing a spatial characterization using Spatial Transcriptomics (ST) across a posterior region containing reproductive tissue and developing embryos of adult female Brugia malayi worms. We provide a proof-of-concept for miniature-ST to explore spatial gene expression patterns in small sample types, demonstrating the method's ability to uncover nuanced tissue region expression patterns, observe the spatial localization of key B. malayi - Wolbachia pathway genes, and co-localize the B. malayi spatial transcriptome in Wolbachia tissue regions, also under antibiotic treatment. We envision our approach will open up new avenues for the study of infectious diseases caused by micro-scale parasitic worms.

Indexed as

Communicable DiseasesParasitesWolbachiaAnimalsAnti-Bacterial AgentsFemaleGene Expression ProfilingHumansSymbiosisTranscriptomeAnti-Bacterial Agents

Identifiers

PMID37838705
PMCPMC10576761
OpenAlexW4387642589

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.