Evidence map›Paper›PMID 37836802›Full record

ArticleMolecules (Basel, Switzerland)2023

Comparison between Variable-Selection Algorithms in PLS Regression with Near-Infrared Spectroscopy to Predict Selected Metals in Soil.

Giovanna Abrantes, Valber Almeida, Angelo Jamil Maia, Rennan Nascimento, Clistenes Nascimento, Ygor Silva, Yuri Silva, Germano Veras

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Giovanna AbrantesDepartamento de Química, Centro de Ciência e Tecnologia, Universidade Estadual da Paraíba, Campina Grande 58429-500, Brazil.ORCID 0000-0002-6118-4013
Valber AlmeidaDepartamento de Química, Centro de Ciência e Tecnologia, Universidade Estadual da Paraíba, Campina Grande 58429-500, Brazil.
Angelo Jamil MaiaAgronomy Department, Federal Rural University of Pernambuco, Recife 52171-900, Brazil.
Rennan NascimentoAgronomy Department, Federal Rural University of Pernambuco, Recife 52171-900, Brazil.
Clistenes NascimentoAgronomy Department, Federal Rural University of Pernambuco, Recife 52171-900, Brazil.
Ygor SilvaAgronomy Department, Federal Rural University of Pernambuco, Recife 52171-900, Brazil.
Yuri SilvaAgronomy Department, Federal University of Piauí, Bom Jesus 64900-000, Brazil.ORCID 0000-0001-6865-7146
Germano VerasDepartamento de Química, Centro de Ciência e Tecnologia, Universidade Estadual da Paraíba, Campina Grande 58429-500, Brazil.ORCID 0000-0003-0173-3778
Universidade Estadual da Paraíba · BRUniversidade Federal Rural de Pernambuco · BRUniversidade Federal do Piauí · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Soil is one of the Earth's most important natural resources. The presence of metals can decrease environmental quality if present in excessive amounts. Analyzing soil metal contents can be costly and time consuming, but near-infrared (NIR) spectroscopy coupled with chemometric tools can offer an alternative. The most important multivariate calibration method to predict concentrations or physical, chemical or physicochemical properties as a chemometric tool is partial least-squares (PLS) regression. However, a large number of irrelevant variables may cause problems of accuracy in the predictive chemometric models. Thus, stochastic variable-selection techniques, such as the Firefly algorithm by intervals in PLS (FFiPLS), can provide better solutions for specific problems. This study aimed to evaluate the performance of FFiPLS against deterministic PLS algorithms for the prediction of metals in river basin soils. The samples had their spectra collected from the region of 1000-2500 nm. Predictive models were then built from the spectral data, including PLS, interval-PLS (iPLS), successive projections algorithm for interval selection in PLS (iSPA-PLS), and FFiPLS. The chemometric models were built with raw data and preprocessed data by using different methods such as multiplicative scatter correction (MSC), standard normal variate (SNV), mean centering, adjustment of baseline and smoothing by the Savitzky-Golay method. The elliptical joint confidence region (EJCR) used in each chemometric model presented adequate fit. FFiPLS models of iron and titanium obtained a relative prediction deviation (RPD) of more than 2. The chemometric models for determination of aluminum obtained an RPD of more than 2 in the preprocessed data with SNV, MSC and baseline (offset + linear) and with raw data. The metals Be, Gd and Y failed to obtain adequate models in terms of residual prediction deviation (RPD). These results are associated with the low values of metals in the samples. Considering the complexity of the samples, the relative error of prediction (REP) obtained between 10 and 25% of the values adequate for this type of sample. Root mean square error of calibration and prediction (RMSEC and RMSEP, respectively) presented the same profile as the other quality parameters. The FFiPLS algorithm outperformed deterministic algorithms in the construction of models estimating the content of Al, Be, Gd and Y. This study produced chemometric models with variable selection able to determine metals in the Ipojuca River watershed soils using reflectance-mode NIR spectrometry.

Indexed as

chemometricsFFiPLSmetal contentmultivariate calibrationvibrational spectroscopy

Identifiers

PMID37836802
PMCPMC10574190
OpenAlexW4387454591

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.