Evidence map›Paper›PMID 37835735›Full record

ArticleAnimals : an open access journal from MDPI2023

Epidemiologic and Genomic Characterizations of Porcine Kobuviruses in Diarrheic and Healthy Pigs.

Yu Zang, Binghui Feng, Zitao Huang, Dashi Zhao, Wenhao Qi, Yuejia Qiu, Ming Qiu, Chen Li, Hong Lin, Wanglong Zheng and 2 more

Open access · goldAbstract read
In one paragraph

Article in Animals : an open access journal from MDPI, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Yu ZangCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Binghui FengCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Zitao HuangAnimal Health Supervision Institute of Fengxi District, Chaozhou 521031, China.
Dashi ZhaoCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Wenhao QiCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Yuejia QiuCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Ming QiuCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Chen LiCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.ORCID 0000-0003-2425-6046
Hong LinCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Wanglong ZhengCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.ORCID 0000-0002-0939-331X
Jianzhong ZhuCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.ORCID 0000-0002-7082-1993
Nanhua ChenCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.ORCID 0000-0002-1909-8760
Yangzhou University · CNLongyan University · CN

Funding

111 Project D18007Applied Basic Research Program of Liaoning Province 2023JH2/10160052National Natural Science Foundation of China 31802172Natural Science Foundation for Excellent Young Scholars of Jiangsu Province BK202111603Open Project Program of Fujian Provincial Key Laboratory for Prevention and Control of Animal Infectious Diseases and Biotechnology ZDSYS2022001Open Project Program of International Research Laboratory of Prevention and Control of Important Animal Infectious Diseases and Zoonotic Diseases of Jiangsu Higher Education Institutions No. 3Open Project Program of Key Laboratory of animal pathogen infection and Immunology of Fujian Province KLAPII202202Priority Academic Program Development of Jiangsu Higher Education Institutions PAPD
6 · The paper itself

Abstract

Porcine kobuvirus (PKV) is an enteric virus commonly detected in both diarrheic and healthy pigs. Little is known about the role of PKV in enteric diseases. In this study, an epidemiological investigation based on 324 intestinal samples collected from six provinces of China during the period of 2018 to 2022 was performed, and showed that PKV has an overall 65.43% (212/324) positive rate. Noticeably, 89.47% (17/19) of PKV and porcine epidemic diarrhea virus (PEDV) double-positive pigs were clinically diseased, while 91.71% (177/193) of PKV-positive but PEDV-negative pigs were clinically healthy, suggesting that PKV infection in itself is unlikely to cause enteric diseases. In addition, three PKV genomes were obtained from both diseased and healthy pigs. Phylogenetic analysis showed that Chinese PKV strains could be divided into three groups (SH-W-CHN-like, S-1-HUN-like and JXAT2015-like strains). All three obtained PKV genomes belong to SH-W-CHN-like strains and JSYZ1806-158 was detected as a recombinant virus. Furthermore, multiple comparisons showed that nucleotide similarities are clearly lower than amino acid similarities for PKV polyproteins. Selective pressure analysis indicated that Chinese PKV polyproteins are predominantly under negative selection. Overall, this study provided new insights into the prevalence and evolution of PKV in both diarrheic and healthy pigs in China.

Indexed as

diarrheic and healthy pigsepidemiologyevolutionpolyproteinporcine kobuvirus

Identifiers

PMID37835735
PMCPMC10571770
OpenAlexW4387454762

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.