Evidence map›Paper›PMID 37833988›Full record

ArticleInternational journal of molecular sciences2023

Analysis of Functional Single-Nucleotide Polymorphisms (SNPs) and Leaf Quality in Tea Collection under Nitrogen-Deficient Conditions.

Lidiia Samarina, Jaroslava Fedorina, Daria Kuzmina, Lyudmila Malyukova, Karina Manakhova, Tatyana Kovalenko, Alexandra Matskiv, Enhua Xia, Wei Tong, Zhaoliang Zhang and 3 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Lidiia SamarinaCenter of Genetics and Life Sciences Sirius University of Science and Technology, Olimpiyskiy Ave. b.1, 354340 Sirius, Russia.ORCID 0000-0002-0500-1198
Jaroslava FedorinaCenter of Genetics and Life Sciences Sirius University of Science and Technology, Olimpiyskiy Ave. b.1, 354340 Sirius, Russia.
Daria KuzminaCenter of Genetics and Life Sciences Sirius University of Science and Technology, Olimpiyskiy Ave. b.1, 354340 Sirius, Russia.
Lyudmila MalyukovaFederal Research Centre the Subtropical Scientific Centre of the Russian Academy of Sciences, 344002 Sochi, Russia.
Karina ManakhovaCenter of Genetics and Life Sciences Sirius University of Science and Technology, Olimpiyskiy Ave. b.1, 354340 Sirius, Russia.
Tatyana KovalenkoCenter of Genetics and Life Sciences Sirius University of Science and Technology, Olimpiyskiy Ave. b.1, 354340 Sirius, Russia.ORCID 0000-0001-6915-8760
Alexandra MatskivFederal Research Centre the Subtropical Scientific Centre of the Russian Academy of Sciences, 344002 Sochi, Russia.
Enhua XiaState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei 230036, China.
Wei TongState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei 230036, China.
Zhaoliang ZhangState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei 230036, China.
Alexey RyndinFederal Research Centre the Subtropical Scientific Centre of the Russian Academy of Sciences, 344002 Sochi, Russia.
Yuriy L OrlovFederal Research Centre the Subtropical Scientific Centre of the Russian Academy of Sciences, 344002 Sochi, Russia.ORCID 0000-0003-0587-1609
Elena K KhlestkinaCenter of Genetics and Life Sciences Sirius University of Science and Technology, Olimpiyskiy Ave. b.1, 354340 Sirius, Russia.ORCID 0000-0002-8470-8254
Russian Academy of Sciences · RUAnhui Agricultural University · CNPeoples' Friendship University of Russia · RUSirius University of Science and Technology · RU

Funding

Russian Science Foundation 22-16-00058, 18-76-10001
6 · The paper itself

Abstract

This study discusses the genetic mutations that have a significant association with economically important traits that would benefit tea breeders. The purpose of this study was to analyze the leaf quality and SNPs in quality-related genes in the tea plant collection of 20 mutant genotypes growing without nitrogen fertilizers. Leaf N-content, catechins, L-theanine, and caffeine contents were analyzed in dry leaves via HPLC. Additionally, the photochemical yield, electron transport efficiency, and non-photochemical quenching were analyzed using PAM-fluorimetry. The next generation pooled amplicon-sequencing approach was used for SNPs-calling in 30 key genes related to N metabolism and leaf quality. The leaf N content varied significantly among genotypes (

Indexed as

Camellia sinensisCatechinBiflavonoidsCaffeineGallic AcidNitrogenPlant LeavesPolymorphism, Single NucleotideTeaBiflavonoidsCaffeineCatechinGallic AcidNitrogenTeatheaflavine gallatecaffeineCamellia sinensiscandidate genescatechingermplasm collectionnitrogen uptakeSNP effecttheaninevariant calling

Identifiers

PMID37833988
PMCPMC10572165
OpenAlexW4387055326

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.