Evidence map›Paper›PMID 37833505›Full record

ArticleCommunications biology2023

Characterization of the AcrIIC1 anti‒CRISPR protein for Cas9‒based genome engineering in E. coli.

Despoina Trasanidou, Ana Potocnik, Patrick Barendse, Prarthana Mohanraju, Evgenios Bouzetos, Efthymios Karpouzis, Amber Desmet, Richard van Kranenburg, John van der Oost, Raymond H J Staals and 1 more

Abstract read
In one paragraph

Article in Communications biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Despoina TrasanidouLaboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands.
Ana Potocnik *Laboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands.
Patrick Barendse *Laboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands.ORCID http://orcid.org/0000-0002-6332-354X
Prarthana MohanrajuLaboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands.
Evgenios BouzetosLaboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands.ORCID http://orcid.org/0000-0001-5111-4030
Efthymios KarpouzisLaboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands.
Amber DesmetLaboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands.
Richard van KranenburgLaboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands.
John van der OostLaboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands.ORCID http://orcid.org/0000-0001-5024-1871
Raymond H J StaalsLaboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands. raymond.staals@wur.nl.ORCID http://orcid.org/0000-0002-5741-9457
Ioannis MougiakosLaboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands. ymouyiakos@googlemail.com.ORCID http://orcid.org/0000-0001-8853-8208

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Anti-CRISPR proteins (Acrs) block the activity of CRISPR-associated (Cas) proteins, either by inhibiting DNA interference or by preventing crRNA loading and complex formation. Although the main use of Acrs in genome engineering applications is to lower the cleavage activity of Cas proteins, they can also be instrumental for various other CRISPR-based applications. Here, we explore the genome editing potential of the thermoactive type II-C Cas9 variants from Geobacillus thermodenitrificans T12 (ThermoCas9) and Geobacillus stearothermophilus (GeoCas9) in Escherichia coli. We then demonstrate that the AcrIIC1 protein from Neisseria meningitidis robustly inhibits their DNA cleavage activity, but not their DNA binding capacity. Finally, we exploit these AcrIIC1:Cas9 complexes for gene silencing and base-editing, developing Acr base-editing tools. With these tools we pave the way for future engineering applications in mesophilic and thermophilic bacteria combining the activities of Acr and CRISPR-Cas proteins.

Indexed as

CRISPR-Cas SystemsEscherichia coliCRISPR-Associated Protein 9DNAGene EditingCRISPR-Associated Protein 9DNA

Identifiers

PMID37833505
PMCPMC10576004

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.